Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0516300-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:20109768:20114569:-1 gene:Os09g0516300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsRRM homologue description:Spen (Split ends)-like protein, Vegetative to reproductive transition (Os09t0516300-01)
Sequence	ATGTCGTCGGAGCCGCCGCCGCCGCAGCCGCAGCCGCAGGAGGCGGCGGGCCGGGAGGCG TCGTCCTCCCTCTCCCCCGCGAAGGAATCTGCCGCCGGTGGAGGCGGGGTCGGGGGGTCG GGGGCACCGGAGACGAACACGCTGTGGGTGGGCAACCTGCCCGCGCAGGCGGCGGAGGAC GACGTGATGGCGTCCTTCTCCCCGCACGGCGCGCTCGACTGCGTCATGGCCCGCGCGGGC CCGCGGAGCTACGCGTTCGTGCTGTTCCGCTCCGTCCCGGAGGCCCGCGCCGCCCTCGAC GCGCTCCAGGGCTCCAAGGTCAAGGGCAGCGTCGTCCGGCTCGAGTTCGCCCGGCCGGCT AGAGCTGTTAAGAACTTATGGGTTGGTGGCATTAGCTCCTCAATTTCAAAGGAGGAGCTG GAGGAGGAGTTTAAGAAATTTGGAAAGGTTGATGGTATTGCATTCTCTCGTGATCAGACT TCCGCGTACATTGATTTTGACAAGCTGGAAGATGCAATTTCGGCACATAGAGCCTTGAAT GGAAGAGTTTTAGGTGGACAAGAACTGTGTGTTGATTTCCAAAGGTCCAGGGGCAGAGCG GAATGGTTGGAGACAGGCAGCTTCAATGGTAGAACTGGACCTGCAAAGGGTTATGGAGTA CGAAATCGAGAATCCAATCCCACCAATGTTCTTTGGGTAGGTTTCCCTAATACAGCTAAA ATCAATGAGGAGGCACTTCGGCAAGCGATGGCTGTACATGGTGCTGTTACAAATACAAAA GTTTTCCCAACAAGGCAATATGCTTTTGTGGAGTTTGCAACAGTTGGGGAAGCTTCTAAT GCTAAGAAAAATCTAGATGGTCGTCTTTTCAATGATCAGAGAATTCAAATTCTTTTCTCG AACAGTGAGCTTGCGCCAAATAAATTAGATAATCCAACAGCAGTTTCTGGATTTCCAAAA TCAGAGATGTATTATGATGATGGTCAGTATGGCGCTTCTGATTATTTTGATCCTCGACGG GGAAGATCAAGATACTTTGAGTACAGTGGTGTCCCTGTTTCTGGTGGTATTCTTCCATCA CCGGAATCTGGAAATCCTCTCTTAACTGGACGATCTGCTCAGAGTACATTCGATCCAAGA GAAGCCAAGAGGTTGCGGTTGGATGCTGCAGCTGACCCTTATGATACAAGGGCAGGTAGT GAGGGTCTTTATTCTGCTGGGTACTCTCAGCGCGAGAGTGCACGTTCTGAGAGGAGCTCA AGTCCTGCTATTCGAATCCATGGCACAGTGCACCGAACATCATACCTTGAGCACTTCTGG CGTGGTAGCATTGCCAAAGGTGGATCTCCTGTATGTCGTGCTCGCTGTTTGCCTATAAGG AAGGGTGTTGAGATACCTTTACCGGATGTTGTTAATTGTTCCGCTAGAACTGGACTAGAT ATGCTGGCAAAGCATTATAGAGACGCTTCAGGGTTTGATATCGTCTTCTTCTTGCCAGAT AGTGAAGATGACTTTGTTTCTTACACTGAATTTTTGCGCTACTTAGGCTCAAAAAGTCGG GCAGGGGTTGTAAAGGTTGATGGGGGGACTACTTTATTTTTGGTCCCACCTTCCGATTTT TTACGAAATGTTTTGCAAGTTGATGGTCCAGAACGTCTTTACGGTGTAGTATTACACATT CCGCAAATGTCTGCTGCTGCTCCTGCTTCTGCTCCCACTCCTGCTGTACAAAGGCCACAA CTAACTGCACCAGAATCACAACCTTACTACGATGAAAGGGAAATTCCTTTGCAGAGAAGG TATAGTATGATTACGCCTAGCAACAATCACCATCGAGATGCTGATCACCGTGGATCTTTA CGTGAGGATTCATTGCATCAATTGGGGCAAATTCTTGCACGACCTCGGGTGGATGAAGGA CAAGTAGTTCAGCCAAACCTTGCCGGTATCCCTACAAACGCAGGACTACAGGTACAGCCT TCACTCCAGCCTGATATGATAGCCACTTTAGCTAAACTTTTGCCAAGTGGGCAGTCATCA GCTCTGGTCACTGGCCAGCTTCCCCTGAGCTCAACAGACCAACCTGCATTAACCCAAATG AATGATGCATCTACTCTTGCAAAAGTATGGAGACCTGAAAATCAAGCAATGGCTTCTACT TCATCCTTAGAGCAGATCGGTAATTTCCAGCATTCAGGACAACAGTTCAGCAAACAAGCT GGAGCAGTTCATCTGCCAAACTATGGGAACTTGGCAGGTGCACAGGAGCACCCAACACAA CATAGTGCTTACAATCCTGAAATGACTCTAAACTTGCCACCACCACCACCACCTCCTACG CTGCCACCCAGTTCTGCTATATTATCATCGCAAGTTGGACACAGTTTGCCTACGCAGATG AGTCAGCAACAGTATCAACCAGAGCAGTATTATATGACTCAAAGCAATTATGGTCAATTG GCCACAGTTAGCAGTTCTAATCTTCAGGCGCACCATCAACAAATTGTTGCGACTCCTGCT GCACAAGCTCCTGTTGCTGCGCAATTCCCTCCTGCTATGCAAGCTCCTGCTGCCGCACAA GCTCCTGTTGCTGCACAAGCTTCTGCTGACGAGGCAGAACGGAACAGGAAGTATCAGGCG ACTCTTCAGTTGGCTCAGCGCCTGTTGGGTCAGCTACAACAGAAGCCTGGAAATCAACCT TAA

Peptide Sequence

PEP ID	Os09t0516300-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:20109768:20114569:-1 gene:Os09g0516300 transcript:Os09t0516300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsRRM homologue description:Spen (Split ends)-like protein, Vegetative to reproductive transition (Os09t0516300-01)
Sequence	MSSEPPPPQPQPQEAAGREASSSLSPAKESAAGGGGVGGSGAPETNTLWVGNLPAQAAED DVMASFSPHGALDCVMARAGPRSYAFVLFRSVPEARAALDALQGSKVKGSVVRLEFARPA RAVKNLWVGGISSSISKEELEEEFKKFGKVDGIAFSRDQTSAYIDFDKLEDAISAHRALN GRVLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVRNRESNPTNVLWVGFPNTAK INEEALRQAMAVHGAVTNTKVFPTRQYAFVEFATVGEASNAKKNLDGRLFNDQRIQILFS NSELAPNKLDNPTAVSGFPKSEMYYDDGQYGASDYFDPRRGRSRYFEYSGVPVSGGILPS PESGNPLLTGRSAQSTFDPREAKRLRLDAAADPYDTRAGSEGLYSAGYSQRESARSERSS SPAIRIHGTVHRTSYLEHFWRGSIAKGGSPVCRARCLPIRKGVEIPLPDVVNCSARTGLD MLAKHYRDASGFDIVFFLPDSEDDFVSYTEFLRYLGSKSRAGVVKVDGGTTLFLVPPSDF LRNVLQVDGPERLYGVVLHIPQMSAAAPASAPTPAVQRPQLTAPESQPYYDEREIPLQRR YSMITPSNNHHRDADHRGSLREDSLHQLGQILARPRVDEGQVVQPNLAGIPTNAGLQVQP SLQPDMIATLAKLLPSGQSSALVTGQLPLSSTDQPALTQMNDASTLAKVWRPENQAMAST SSLEQIGNFQHSGQQFSKQAGAVHLPNYGNLAGAQEHPTQHSAYNPEMTLNLPPPPPPPT LPPSSAILSSQVGHSLPTQMSQQQYQPEQYYMTQSNYGQLATVSSSNLQAHHQQIVATPA AQAPVAAQFPPAMQAPAAAQAPVAAQASADEAERNRKYQATLQLAQRLLGQLQQKPGNQP

Transcript Sequence

Transcript ID	Os09t0516300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:20109768:20114569:-1 gene:Os09g0516300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsRRM homologue description:Spen (Split ends)-like protein, Vegetative to reproductive transition (Os09t0516300-01)
Sequence	ACCCCACCTCATCGCCTCAGAATTCAGAAACGAAAGCCAAAAAAAAAAAAAAAAAAAAAT CCCCATCTGCTTTAGGGTTTCCGTCGATCTCTCTCCCTCGCGCGCGCCGCCGATGTCGTC GGAGCCGCCGCCGCCGCAGCCGCAGCCGCAGGAGGCGGCGGGCCGGGAGGCGTCGTCCTC CCTCTCCCCCGCGAAGGAATCTGCCGCCGGTGGAGGCGGGGTCGGGGGGTCGGGGGCACC GGAGACGAACACGCTGTGGGTGGGCAACCTGCCCGCGCAGGCGGCGGAGGACGACGTGAT GGCGTCCTTCTCCCCGCACGGCGCGCTCGACTGCGTCATGGCCCGCGCGGGCCCGCGGAG CTACGCGTTCGTGCTGTTCCGCTCCGTCCCGGAGGCCCGCGCCGCCCTCGACGCGCTCCA GGGCTCCAAGGTCAAGGGCAGCGTCGTCCGGCTCGAGTTCGCCCGGCCGGCTAGAGCTGT TAAGAACTTATGGGTTGGTGGCATTAGCTCCTCAATTTCAAAGGAGGAGCTGGAGGAGGA GTTTAAGAAATTTGGAAAGGTTGATGGTATTGCATTCTCTCGTGATCAGACTTCCGCGTA CATTGATTTTGACAAGCTGGAAGATGCAATTTCGGCACATAGAGCCTTGAATGGAAGAGT TTTAGGTGGACAAGAACTGTGTGTTGATTTCCAAAGGTCCAGGGGCAGAGCGGAATGGTT GGAGACAGGCAGCTTCAATGGTAGAACTGGACCTGCAAAGGGTTATGGAGTACGAAATCG AGAATCCAATCCCACCAATGTTCTTTGGGTAGGTTTCCCTAATACAGCTAAAATCAATGA GGAGGCACTTCGGCAAGCGATGGCTGTACATGGTGCTGTTACAAATACAAAAGTTTTCCC AACAAGGCAATATGCTTTTGTGGAGTTTGCAACAGTTGGGGAAGCTTCTAATGCTAAGAA AAATCTAGATGGTCGTCTTTTCAATGATCAGAGAATTCAAATTCTTTTCTCGAACAGTGA GCTTGCGCCAAATAAATTAGATAATCCAACAGCAGTTTCTGGATTTCCAAAATCAGAGAT GTATTATGATGATGGTCAGTATGGCGCTTCTGATTATTTTGATCCTCGACGGGGAAGATC AAGATACTTTGAGTACAGTGGTGTCCCTGTTTCTGGTGGTATTCTTCCATCACCGGAATC TGGAAATCCTCTCTTAACTGGACGATCTGCTCAGAGTACATTCGATCCAAGAGAAGCCAA GAGGTTGCGGTTGGATGCTGCAGCTGACCCTTATGATACAAGGGCAGGTAGTGAGGGTCT TTATTCTGCTGGGTACTCTCAGCGCGAGAGTGCACGTTCTGAGAGGAGCTCAAGTCCTGC TATTCGAATCCATGGCACAGTGCACCGAACATCATACCTTGAGCACTTCTGGCGTGGTAG CATTGCCAAAGGTGGATCTCCTGTATGTCGTGCTCGCTGTTTGCCTATAAGGAAGGGTGT TGAGATACCTTTACCGGATGTTGTTAATTGTTCCGCTAGAACTGGACTAGATATGCTGGC AAAGCATTATAGAGACGCTTCAGGGTTTGATATCGTCTTCTTCTTGCCAGATAGTGAAGA TGACTTTGTTTCTTACACTGAATTTTTGCGCTACTTAGGCTCAAAAAGTCGGGCAGGGGT TGTAAAGGTTGATGGGGGGACTACTTTATTTTTGGTCCCACCTTCCGATTTTTTACGAAA TGTTTTGCAAGTTGATGGTCCAGAACGTCTTTACGGTGTAGTATTACACATTCCGCAAAT GTCTGCTGCTGCTCCTGCTTCTGCTCCCACTCCTGCTGTACAAAGGCCACAACTAACTGC ACCAGAATCACAACCTTACTACGATGAAAGGGAAATTCCTTTGCAGAGAAGGTATAGTAT GATTACGCCTAGCAACAATCACCATCGAGATGCTGATCACCGTGGATCTTTACGTGAGGA TTCATTGCATCAATTGGGGCAAATTCTTGCACGACCTCGGGTGGATGAAGGACAAGTAGT TCAGCCAAACCTTGCCGGTATCCCTACAAACGCAGGACTACAGGTACAGCCTTCACTCCA GCCTGATATGATAGCCACTTTAGCTAAACTTTTGCCAAGTGGGCAGTCATCAGCTCTGGT CACTGGCCAGCTTCCCCTGAGCTCAACAGACCAACCTGCATTAACCCAAATGAATGATGC ATCTACTCTTGCAAAAGTATGGAGACCTGAAAATCAAGCAATGGCTTCTACTTCATCCTT AGAGCAGATCGGTAATTTCCAGCATTCAGGACAACAGTTCAGCAAACAAGCTGGAGCAGT TCATCTGCCAAACTATGGGAACTTGGCAGGTGCACAGGAGCACCCAACACAACATAGTGC TTACAATCCTGAAATGACTCTAAACTTGCCACCACCACCACCACCTCCTACGCTGCCACC CAGTTCTGCTATATTATCATCGCAAGTTGGACACAGTTTGCCTACGCAGATGAGTCAGCA ACAGTATCAACCAGAGCAGTATTATATGACTCAAAGCAATTATGGTCAATTGGCCACAGT TAGCAGTTCTAATCTTCAGGCGCACCATCAACAAATTGTTGCGACTCCTGCTGCACAAGC TCCTGTTGCTGCGCAATTCCCTCCTGCTATGCAAGCTCCTGCTGCCGCACAAGCTCCTGT TGCTGCACAAGCTTCTGCTGACGAGGCAGAACGGAACAGGAAGTATCAGGCGACTCTTCA GTTGGCTCAGCGCCTGTTGGGTCAGCTACAACAGAAGCCTGGAAATCAACCTTAAGGCTA TCCTGGAAATCAACCTTCAGGCTAAGTTACTTATTCAGGTACGTTTTATGTGCTGCTCTG CAATTGTTCTTTCCGTGCCATTTACAACTTCTCTGCTATGAAATTAGGTATCAAGTGAAA TATCCAAACAGATTCAGGCATTCAGCTAATCGTAGGTGTAGTATATGCACTTCTTAAAAG TTAAAACCAGAAACTCTGCTAACAAGTTTTGTAGGCTTTATTTCTGCTAGGGCATAGTCC AATTTAGGCGAACAAGGGAGATATGATAGTTTGCATCATACTTGTTCCCTTGTATTTTGT TCAAGCATATCTTAACAAAGTTGAGGTTTTTTTCCTTAGAAAAACAAATATATATATATG ACAAACTATTAAGATGACTTTTAAACTTGGAATTTAAACTATTAAGGTTAGCTTATGCAT ATCACGGATTATAATTGTGGCTGGTTACAGTTTTAGATCTTTTTAGTGAGACACGTTTAC CATTTTCTGTGCATTTGCTATTGATAGTATTTAATTTATAGTTGTGTGATATGTTATCTG CATATTCTTGTGTTATTCTAGTATATACAATGCTTAGGTTGTTCTACGAGTGTGCATACC ATACACAAGCATTCAAGTTATTTGATTTGATAAATGTATGAACTTCTTTCATGTAATAAG CTTTGTGGTAATCTAAAGTAGCGAACCTTATCTGAAATGAACCCAAAATCACATTTTGCC