Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0515200-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:20066961:20069392:-1 gene:Os09g0515200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:20S proteasome beta7 subunit description:Beta 7 subunit of 20S proteasome. (Os09t0515200-01);Beta 7 subunit of 20S proteasome. (Os09t0515200-02)
Sequence

ATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCG
GTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATT
ATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGC
TCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATT
GGAGCAAGTGGGGAGTTCAGTGATTTCCAGGAGATTTTGCGCTATTTGGATGAATTAACC
CTGTCCGATCATATGTGGGATGATGGAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTAC
CTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTA
ATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATG
ATTGGTACACACTTTGAGGAAAACCACATTGCCACTGGGTTTGGGAACCATATGGCAATC
CCAATACTTCGTACTGAATGGCGCGAGGACATGACATTTGAGGAAGCTGTCAAGCTTGTT
GAGAAGTGCTTGCTTGTCCTGCTGTACCGTGACCGATCATCTATTAACAAGTTCCAGATT
GCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACTGG
GGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAG

Peptide Sequence

PEP ID

Os09t0515200-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:20066961:20069392:-1 gene:Os09g0515200 transcript:Os09t0515200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:20S proteasome beta7 subunit description:Beta 7 subunit of 20S proteasome. (Os09t0515200-01);Beta 7 subunit of 20S proteasome. (Os09t0515200-02)
Sequence

MAWQQPMDGSHASGSKAAAAVADGPGTQRTQYPYVTGSSIIALKYKDGVIMASDTGASYG
STLRYKSVERIKAVGKHSLIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSY
LTRVMYNRRNKFDPLWNSLVIGGVKKGPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAI
PILRTEWREDMTFEEAVKLVEKCLLVLLYRDRSSINKFQIAKITTEGATIYPPYSLKTYW
GFAAFENPAQGAVGSW

Transcript Sequence

Transcript ID

Os09t0515200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:20066961:20069392:-1 gene:Os09g0515200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:20S proteasome beta7 subunit description:Beta 7 subunit of 20S proteasome. (Os09t0515200-01);Beta 7 subunit of 20S proteasome. (Os09t0515200-02)
Sequence

CTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGG
AGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTAT
GTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGAC
ACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTT
GGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATTTCCAGGAGATTTTGCGC
TATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATGGAAACTCCTTGGGTCCC
AAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCC
CTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATAT
CTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCACTGGGTTT
GGGAACCATATGGCAATCCCAATACTTCGTACTGAATGGCGCGAGGACATGACATTTGAG
GAAGCTGTCAAGCTTGTTGAGAAGTGCTTGCTTGTCCTGCTGTACCGTGACCGATCATCT
ATTAACAAGTTCCAGATTGCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATAC
TCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGA
TCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGA
AACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCC
AGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTTCTGTGGCCGTT
AAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCG