Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0513700-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:19997060:19999811:1 gene:Os09g0513700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-02)
Sequence

ATGAGCGGCGGCAGCGGCGGCGGCGCCGCGAGCGCGGTGTTCTACGCGGAGAAGTACCAC
CCGATCCAGGCGGGCAGCATCGACGGCACCGACGTCGCCCCCCACGACAACGCCGTCCTC
CGCGCCCTCCTCTGCTCCACCGCCGGCCTCTATGATCCGTTCGGGGACCCCAAGGCCACC
GGCGACCCCTACTGCACGGTGTTCGTCGGGAGACTCTCCCGCTACACCGACGACGAGACA
CTCCGGAAGGAGATGAGCAGATATGGGAGGGTGAAGAGCATGCGGCTGGTGCGGGATATT
GTTACTGGTGCTTCTCGTGGCTACGCATTTGTTGAGTATGAAACTGACAGGGAGATGCGC
CGTGCCTATGAGGATGCACACCATTCCATTATTGATGGCAGTGAAGTGCTTGTAGATTAC
TACAGGCAACAACTTATGCCTGGATGGATACCGAGGAGATCAGGAGGAGGGCTTGGAGGG
AAGAAAGAATCTGGCCAGCTTCGATTTGGAGGTCGAGAGAGGCCATTTCGTGCTCCCTTG
AGGCCAATTCCGTATGATGAACTGAAAAGGCTTGGGATCCCACCACCACCTGAAGGGCGA
TACATGACACGTTATCAGGTTCCCCCACCACCAAGACGAAAAAGCAGTGATATCTACAGG
GAAGAGTCACCTCCCAAGAGAAGATCCAAAGACAGGGTTGATAGCAGTCACTACAGAAGA
TATTGTAGCCCAACCCAAGACGACGACAGCACGGTCAGCACCCATAGGCGGAAAGGTAGC
CATGACCGGCGAGAAGAAACCGAGAGGAGGACAAGAGCATATATCAGCAGAGAGGCCGGC
AGCTACAGTAAGCGGAGCCCAACCGAAGACGATGGTGATCGTCGTAAGAGGAGAAGAAGC
CGAGAGCCTGGAGAATTATCTCCATACAAGGAGGATGATGATAACAGCAAAAGAGGAAGA
AGTTCAGTGGAGCCAGGCTTCAGCCCTTATCAGTCTCATCACCACAGGCATCACAGGGAG
CGTCATGACAGCAGCAGCCATTCTCGCCACGGTGAACGTCGGCATCAAGACGACCGTGGA
AACCACTCCAGGAACAGGAGATCAGAGAGCCGGGACTACAGCCACTAG

Peptide Sequence

PEP ID

Os09t0513700-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:19997060:19999811:1 gene:Os09g0513700 transcript:Os09t0513700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-02)
Sequence

MSGGSGGGAASAVFYAEKYHPIQAGSIDGTDVAPHDNAVLRALLCSTAGLYDPFGDPKAT
GDPYCTVFVGRLSRYTDDETLRKEMSRYGRVKSMRLVRDIVTGASRGYAFVEYETDREMR
RAYEDAHHSIIDGSEVLVDYYRQQLMPGWIPRRSGGGLGGKKESGQLRFGGRERPFRAPL
RPIPYDELKRLGIPPPPEGRYMTRYQVPPPPRRKSSDIYREESPPKRRSKDRVDSSHYRR
YCSPTQDDDSTVSTHRRKGSHDRREETERRTRAYISREAGSYSKRSPTEDDGDRRKRRRS
REPGELSPYKEDDDNSKRGRSSVEPGFSPYQSHHHRHHRERHDSSSHSRHGERRHQDDRG
NHSRNRRSESRDYSH

Transcript Sequence

Transcript ID

Os09t0513700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:19997060:19999811:1 gene:Os09g0513700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-02)
Sequence

AGGCCACCCCCGTTCTCCTCCCCGCCGCCGCCACCGGCGCCTCCCGCTCGTCCCCGGCCG
GCGAGTCGCGTAGGAGGGAAGCGCCACCGGCGGCGGCCGCGGCGAGATGAGCGGCGGCAG
CGGCGGCGGCGCCGCGAGCGCGGTGTTCTACGCGGAGAAGTACCACCCGATCCAGGCGGG
CAGCATCGACGGCACCGACGTCGCCCCCCACGACAACGCCGTCCTCCGCGCCCTCCTCTG
CTCCACCGCCGGCCTCTATGATCCGTTCGGGGACCCCAAGGCCACCGGCGACCCCTACTG
CACGGTGTTCGTCGGGAGACTCTCCCGCTACACCGACGACGAGACACTCCGGAAGGAGAT
GAGCAGATATGGGAGGGTGAAGAGCATGCGGCTGGTGCGGGATATTGTTACTGGTGCTTC
TCGTGGCTACGCATTTGTTGAGTATGAAACTGACAGGGAGATGCGCCGTGCCTATGAGGA
TGCACACCATTCCATTATTGATGGCAGTGAAGTGCTTGTAGATTACTACAGGCAACAACT
TATGCCTGGATGGATACCGAGGAGATCAGGAGGAGGGCTTGGAGGGAAGAAAGAATCTGG
CCAGCTTCGATTTGGAGGTCGAGAGAGGCCATTTCGTGCTCCCTTGAGGCCAATTCCGTA
TGATGAACTGAAAAGGCTTGGGATCCCACCACCACCTGAAGGGCGATACATGACACGTTA
TCAGGTTCCCCCACCACCAAGACGAAAAAGCAGTGATATCTACAGGGAAGAGTCACCTCC
CAAGAGAAGATCCAAAGACAGGGTTGATAGCAGTCACTACAGAAGATATTGTAGCCCAAC
CCAAGACGACGACAGCACGGTCAGCACCCATAGGCGGAAAGGTAGCCATGACCGGCGAGA
AGAAACCGAGAGGAGGACAAGAGCATATATCAGCAGAGAGGCCGGCAGCTACAGTAAGCG
GAGCCCAACCGAAGACGATGGTGATCGTCGTAAGAGGAGAAGAAGCCGAGAGCCTGGAGA
ATTATCTCCATACAAGGAGGATGATGATAACAGCAAAAGAGGAAGAAGTTCAGTGGAGCC
AGGCTTCAGCCCTTATCAGTCTCATCACCACAGGCATCACAGGGAGCGTCATGACAGCAG
CAGCCATTCTCGCCACGGTGAACGTCGGCATCAAGACGACCGTGGAAACCACTCCAGGAA
CAGGAGATCAGAGAGCCGGGACTACAGCCACTAGAGGTGTCGAGTCCATGGTGGGTTCCT
AGTGTTTTAACCTGAATCCCTGGCTGCCTGTTCGCTGCTTCAACTCATGTATATGATCTA
GTTTTCTCAGGCGTCCTTGCCTTGGGTTGCCTGTGTAGTGAGGGCTACTAAACCTGAAGT
TTCGACTTTGGAATACATGAATTAATAGAATTCATGATTTAGT