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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0511500-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:19878398:19882134:1 gene:Os09g0511500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0511500-01)
Sequence

ATGGCCTTCGCGGCGGAGCCGATGGATCTGGAGGTGTCGCCGGATTCCTCGCCGGCGGCG
GCGGCGGCGGCGGCGGTGTGCTCGATCTGCCTGGACGCGGTGGCGTGCGGCGACGGGGTG
GCGGCGAGGTCCACCGCGCGGCTGCAGTGCGGCCACGAGTTCCACCTAGACTGCATTGGA
TCTGCATTTAATGCAAAAGGGGTGATGCAGTGCCCAAATTGTCGGAATATTGAGAAAGGT
CACTGGCTCTATGGGAATGAGAGCCAACCATGTAGCCATTCTGATACAGGTGACTGGCTG
AATGGTGAAACCTTTGACTACCCGTTCTCATTTGAATTTGGGTGGTGTCCCTTCAATACA
CCATTGACCTCTGTTTTTGGGGAAAGCGAATCTGAGCCAAATCCTTTTTTGGAGTATATA
GGGTCTCTGCATGGTTTTCACCATCCAATGTATGCGCCTTCTAGTTCTACTGCCAGTACT
GAAAGCATACCATTCCATCAGCGTCCTACTGGTACGGAAGGTCATGCAACTACAGATTTG
AGAAATACTCAAGTTTTCAATGAATCTGAGCCAAGAAACCATGAGAGAGAACAGCAGTAT
TTAGGTAGTGTTCAAATGCCTGGAACACTCAATCATTCCACCGCCCCATTTGGCATAGGA
ATGCCAAGATATGATGGAGGCAACCAGCAAAGATTGCGACCACATATGCATGATAATTCC
TTATTCCACAGGCCGACAGCTCGCAGAGCAAGCAATCTTGCACATTTGAGGTCATTAACT
GCTGCGTCTGAAACTAGAGGCCATGGCCATGGTATGACAAGTCACGCTGTTCAACAAACA
ATTCCATCATCCATGGCAAGCAATCCACAACCTCCTGCGACCAGAAGGGTTCGACCAAGG
GCTTTGTCAATCACATCTTTCATTGCAGCCTCATCGTCAGCTGAGATCAGAGCCCCCCAT
GACTTTCCTCTCACTGAAACCGCAAGCACCACAAACGGTAACATCCGTAATGGTGTTGGT
GCCCCTAGACATGCCAATCAATCATACAGCTGGAGTTCAGAGACCTTCTGGCCACAAACT
GGGGAACCTCACTGGTGGAGTCCGATGGCTCCCGTACATAATCGATCTTATGATAATTTT
AGTGGAAGATCAGCCACAGAGCTGCTTTCCATTTATGGCGCACAGAATGGTCTGCCTACT
CCGCGATTCCTGTGA

Peptide Sequence

PEP ID

Os09t0511500-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:19878398:19882134:1 gene:Os09g0511500 transcript:Os09t0511500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0511500-01)
Sequence

MAFAAEPMDLEVSPDSSPAAAAAAAVCSICLDAVACGDGVAARSTARLQCGHEFHLDCIG
SAFNAKGVMQCPNCRNIEKGHWLYGNESQPCSHSDTGDWLNGETFDYPFSFEFGWCPFNT
PLTSVFGESESEPNPFLEYIGSLHGFHHPMYAPSSSTASTESIPFHQRPTGTEGHATTDL
RNTQVFNESEPRNHEREQQYLGSVQMPGTLNHSTAPFGIGMPRYDGGNQQRLRPHMHDNS
LFHRPTARRASNLAHLRSLTAASETRGHGHGMTSHAVQQTIPSSMASNPQPPATRRVRPR
ALSITSFIAASSSAEIRAPHDFPLTETASTTNGNIRNGVGAPRHANQSYSWSSETFWPQT
GEPHWWSPMAPVHNRSYDNFSGRSATELLSIYGAQNGLPTPRFL

Transcript Sequence

Transcript ID

Os09t0511500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:19878398:19882134:1 gene:Os09g0511500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0511500-01)
Sequence

AGACAATCCCCCCCTCCTCTCGCAGACATCCGGGCCCCACCACGTCAGCCTCTCATGGCC
TTCGCGGCGGAGCCGATGGATCTGGAGGTGTCGCCGGATTCCTCGCCGGCGGCGGCGGCG
GCGGCGGCGGTGTGCTCGATCTGCCTGGACGCGGTGGCGTGCGGCGACGGGGTGGCGGCG
AGGTCCACCGCGCGGCTGCAGTGCGGCCACGAGTTCCACCTAGACTGCATTGGATCTGCA
TTTAATGCAAAAGGGGTGATGCAGTGCCCAAATTGTCGGAATATTGAGAAAGGTCACTGG
CTCTATGGGAATGAGAGCCAACCATGTAGCCATTCTGATACAGGTGACTGGCTGAATGGT
GAAACCTTTGACTACCCGTTCTCATTTGAATTTGGGTGGTGTCCCTTCAATACACCATTG
ACCTCTGTTTTTGGGGAAAGCGAATCTGAGCCAAATCCTTTTTTGGAGTATATAGGGTCT
CTGCATGGTTTTCACCATCCAATGTATGCGCCTTCTAGTTCTACTGCCAGTACTGAAAGC
ATACCATTCCATCAGCGTCCTACTGGTACGGAAGGTCATGCAACTACAGATTTGAGAAAT
ACTCAAGTTTTCAATGAATCTGAGCCAAGAAACCATGAGAGAGAACAGCAGTATTTAGGT
AGTGTTCAAATGCCTGGAACACTCAATCATTCCACCGCCCCATTTGGCATAGGAATGCCA
AGATATGATGGAGGCAACCAGCAAAGATTGCGACCACATATGCATGATAATTCCTTATTC
CACAGGCCGACAGCTCGCAGAGCAAGCAATCTTGCACATTTGAGGTCATTAACTGCTGCG
TCTGAAACTAGAGGCCATGGCCATGGTATGACAAGTCACGCTGTTCAACAAACAATTCCA
TCATCCATGGCAAGCAATCCACAACCTCCTGCGACCAGAAGGGTTCGACCAAGGGCTTTG
TCAATCACATCTTTCATTGCAGCCTCATCGTCAGCTGAGATCAGAGCCCCCCATGACTTT
CCTCTCACTGAAACCGCAAGCACCACAAACGGTAACATCCGTAATGGTGTTGGTGCCCCT
AGACATGCCAATCAATCATACAGCTGGAGTTCAGAGACCTTCTGGCCACAAACTGGGGAA
CCTCACTGGTGGAGTCCGATGGCTCCCGTACATAATCGATCTTATGATAATTTTAGTGGA
AGATCAGCCACAGAGCTGCTTTCCATTTATGGCGCACAGAATGGTCTGCCTACTCCGCGA
TTCCTGTGAATACTTGTCTTCCCTCCATCGTGTATATTCCGGGGTTGGCCGATATTTGGG
TTTGTTTCAGCAAAGAATGGGAAATAACTGAGGCTTCAGTGTCAGGAACTCAGGTTGCTG
TCATTAATCGTCATCTTATGTTGATGATGCCGGTATTTCGTACCGTTATGGTTTTTTATT
TCTGGAAGGCAACCTCATGTTAGTTTCTTCAAGTGAAGATGCTTTATGAATTGTCTCAGT
TAAAGTGACAATATTGTTTGGAATTCTCTATATGTGCTAGTCCTGAATCATACTGAGGAA
AATGCTGCTAAACAATGTTGCCATTGAACTGTAGTAATTATCGAATCAAATGCTTCTGCT
GTATATCTTGAATCATCCATCTCTACTACTTTATACTCTTTCCGTTCCAT