Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0509300-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:19760481:19766335:1 gene:Os09g0509300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HRGP. (Os09t0509300-01)
Sequence

ATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTG
GACCGCCGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCC
TCGCAGGATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCG
ATTGCAAATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTT
AAAAGAGTCACACCAAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAG
GCCCAGTTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATC
ACCACTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAG
TGTGATGAAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGA
TCTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGAT
TATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTC
AGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAG
GGGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACAC
ATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAGAAAATGAG
GATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGC
ACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCA
GAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTT
CCTGAAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGG
AAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTT
ACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCA
CTCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGA
TTATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACA
ATGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCT
GACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCA
ACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCA
ATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAG
GAGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGT
TTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAG
GATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCG
ACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCA
GGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGC
CTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCT
ACCGAGTCAGTTAGCAAAACATAG

Peptide Sequence

PEP ID

Os09t0509300-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:19760481:19766335:1 gene:Os09g0509300 transcript:Os09t0509300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HRGP. (Os09t0509300-01)
Sequence

MKSSLRKLRGFALQRHEQRVDRRGGHSPAAAAAANELLAASQDMADMRSCYDNLLSVAAA
IANSAYEFSEALQEMGTCLLKRVTPNKDGINDKVLLLLGKAQFELRKLVDSYRVHVLNTI
TTPSQSLLNELQTVEEMKHQCDEKRELFEFLLNAQKEKGRSKNAKSDIGASEQLKQAQDD
YQEEATLFLFRLKSLKQGQFRSLFTQAARHHAAQLNLFRKGLKSLEAVEPHVRLAAEQQH
IDHQFSALDEEDYSVDEENEDDYNDSHEDLSFDYGENKEGTEAGHASRSPTEELLDRSKA
EYSSFPGERQRSGSQSAPLFPEKKLEAAERIKELRRSATRKLYTYVLPTPNDVRDTSQTV
TANPTSGSPLGNKGAFYSSPLQPSTNVGDLRDNKLPSPTRLSNAHSVLKESNTNTTDTRT
MLVLPLGDLSLPGYHDSKASDNKKVKRGSFSGPIVPRSRSTENIDVVSVPPRHSSSHQPS
IHVRVSPNTSPPLLSSPKIKELHELPRPPANASKHTTFPSLVAHSAPLVPNSAPLAPRGQ
DHFRPRQTPPSAPQTASPLPTPPGPISRSFSIPSRGMRTSGISDGKETEDLQDKGPARMS
LSSLPSAQTSLEDHRPLSGATESVSKT

Transcript Sequence

Transcript ID

Os09t0509300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:19760481:19766335:1 gene:Os09g0509300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HRGP. (Os09t0509300-01)
Sequence

TTTCCTTCTCTCTCTCTCTCTCATCTCTCTCAGTGAGGAGTGGTGGTGTAGCTAAGCTAG
GGTTTCGCTCGGAATCAGGGTTCGGTTTCCTCCACCGGAATTGGCGGCGATCTGGAGCTC
GGCACGGCGGCGCGCGGCGTGATCCGGACGCTCGGGTAGGTGAGGGAGGGAGGGAGGAGA
TGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTGG
ACCGCCGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCCT
CGCAGGATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGA
TTGCAAATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTA
AAAGAGTCACACCAAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGG
CCCAGTTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCA
CCACTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAGT
GTGATGAAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGAT
CTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGATT
ATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTCA
GAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAGG
GGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACA
TTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAGAAAATGAGG
ATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCA
CAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAG
AGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTC
CTGAAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGA
AGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTA
CAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCAC
TCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGAT
TATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAA
TGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCTG
ACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAA
CAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAA
TACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGG
AGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGTT
TAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGG
ATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCGA
CACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAG
GTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCC
TTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTA
CCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAG
GGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAAT
ATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAAT
AACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATT