Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0506800-02
CDS Infomation	cds chromosome:IRGSP-1.0:9:19620684:19628678:1 gene:Os09g0506800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2 description:Similar to Meiotic asynaptic mutant 1. (Os09t0506800-01);Similar to Essential protein for meiotic synapsis. (Os09t0506800-02)
Sequence	ATGGTGATGGCTCAGAAGACGAAGGAGGCGGAGATCACGGAGCAGGATTCGCTGCTTCTG ACAAGGAATTTGCTCCGCATTGCTATATACAACATCAGCTACATCAGAGGTCTATTCCCT GAGAAGTACTTCAATGATAAGTCGGTTCCGGCACTAGAGATGAAGATTAAGAAGCTAATG CCCATGGATACTGAGTCGAGGAGGTTGATTGATTGGATGGAAAAAGGTGTCTATGATGCA CTACAGAAGAAATATCTCAAGACCCTTCTCTTCTGCATCTGTGAGAAGGAGGAAGGCCCA ATGATTGAGGAGTATGCATTCTCATTTAGCTACCCCAACACGAGCGGTGATGAAGTTGCA ATGAACTTGAGCCGCACAGGGAGCAAGAAAAACAGTGCTACATTTAAATCAAATGCAGCA GAAGTCACTCCTGATCAGATGAGGAGCTCTGCTTGTAAGATGATAAGAACACTGGTTTCA CTTATGAGGACCTTGGACCAAATGCCAGAGGAGAGGACCATTCTAATGAAGCTGCTATAC TACGATGATGTCACACCTGAAGATTACGAGCCACCCTTTTTTAAGTGTTGCGCTGACAAC GAGGCCATAAATATATGGAACAAGAACCCCTTGAAGATGGAAGTTGGAAATGTCAATAGC AAGCATCTCGTGTTAGCTTTGAAGGTCAAGAGTGTCCTTGACCCTTGTGATGATAACAAT GTCAACAGTGAAGATGATAATATGAGCTTGGATAATGAATCTGACCAAGATAATGATTTT TCTGACACTGAGGTTCGCCCATCTGAAGCAGAGCGTTACATTGTTGCTCCAAATGATGGG ACTTGCAAAGGTCAAAATGGTACAATCTCAGAAGATGATACTCAAGATCCTGTTCACGAG GAAGAGCTAACAGCTCAAGTAAGAGAGTGGATATGCTCAAGAGACACTGAAAGTCTTGAG GTTTCAGATGTCCTTGTTAATTTCCCCGACATATCAATGGAAATGGTTGAAGATATTATG GAGAGGCTACTTAAAGATGGTTTACTATCCAGAGCAAAAAAGGATAGTTATTCTGTTAAT AAGATTGCTGATCCTACAACACCACACATAAAGAAAGAGGTCATCATGCAAAATGTCTCA CCTACTGAAGGAACTAAAAATAGCAATGGTGATCTGATGTATATGAAGGCACTGTACCAT GCACTTCCAATGGATTATGTGTCAGTAGGCAAACTTCATGGCAAGCTAGATGGGGAGGCC AGCCAGAACATGGTTCGTAAGTTGATTGAAAAAATGGTGCAAGACGGATATGTCAAGAAT TCAGCCAACCGAAGACTAGGCAAAGCTGTCATTCATTCTGAAGTCACCAACAGAAAGCTC CTTGAGATAAAAAAGATTCTGGAAGTCGATATAGCCGAACAAATGGCCATTGATACCAAT GCAGAACCTGGTGAGCCTGAGCGCAAAGACCACCTGAGTGGCCATGAAATGAGAGATGGA TCGACGATGGGTTGCCTCCAGTCCGTCGGATCTGACCTCACCCGCACCCGGGAGCTTCCG GAGCCGCAGCAGAACGTGTCCATGCAGAGCGGGCAGGAAGCTTCCACGGTGGATAAGGAT CCAAGCAGGACTCCTACAAGCGTGCGCGAGCAGGCGTCCGTTTGTTCCCTGGAGAGTGGG GTTCTCGGGCAGAAGGTCAGAAAGTCTTTGGCTGGTGCTGGCGGGACGCAGTGCTCGCAG GACAAGCGATTCAGGAAGGCCAGCACGGTGAAGGAGCCGATCCTCCAGTACGTCAAGCGC CAGAAGTCCCAAGTTCAAGTTCAAGTTCAGTGA

Peptide Sequence

PEP ID	Os09t0506800-02
PEP Infomation	pep chromosome:IRGSP-1.0:9:19620684:19628678:1 gene:Os09g0506800 transcript:Os09t0506800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2 description:Similar to Meiotic asynaptic mutant 1. (Os09t0506800-01);Similar to Essential protein for meiotic synapsis. (Os09t0506800-02)
Sequence	MVMAQKTKEAEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLM PMDTESRRLIDWMEKGVYDALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNTSGDEVA MNLSRTGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVSLMRTLDQMPEERTILMKLLY YDDVTPEDYEPPFFKCCADNEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNN VNSEDDNMSLDNESDQDNDFSDTEVRPSEAERYIVAPNDGTCKGQNGTISEDDTQDPVHE EELTAQVREWICSRDTESLEVSDVLVNFPDISMEMVEDIMERLLKDGLLSRAKKDSYSVN KIADPTTPHIKKEVIMQNVSPTEGTKNSNGDLMYMKALYHALPMDYVSVGKLHGKLDGEA SQNMVRKLIEKMVQDGYVKNSANRRLGKAVIHSEVTNRKLLEIKKILEVDIAEQMAIDTN AEPGEPERKDHLSGHEMRDGSTMGCLQSVGSDLTRTRELPEPQQNVSMQSGQEASTVDKD PSRTPTSVREQASVCSLESGVLGQKVRKSLAGAGGTQCSQDKRFRKASTVKEPILQYVKR QKSQVQVQVQ

Transcript Sequence

Transcript ID	Os09t0506800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:19620684:19628678:1 gene:Os09g0506800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2 description:Similar to Meiotic asynaptic mutant 1. (Os09t0506800-01);Similar to Essential protein for meiotic synapsis. (Os09t0506800-02)
Sequence	ACTCCTCTCCCCTCTCCCTTCTCTCATCTCGCGCGCGGCGCGCCGCCGTAGAGACGAAAT GGTGATGGCTCAGAAGACGAAGGAGGCGGAGATCACGGAGCAGGATTCGCTGCTTCTGAC AAGGAATTTGCTCCGCATTGCTATATACAACATCAGCTACATCAGAGGTCTATTCCCTGA GAAGTACTTCAATGATAAGTCGGTTCCGGCACTAGAGATGAAGATTAAGAAGCTAATGCC CATGGATACTGAGTCGAGGAGGTTGATTGATTGGATGGAAAAAGGTGTCTATGATGCACT ACAGAAGAAATATCTCAAGACCCTTCTCTTCTGCATCTGTGAGAAGGAGGAAGGCCCAAT GATTGAGGAGTATGCATTCTCATTTAGCTACCCCAACACGAGCGGTGATGAAGTTGCAAT GAACTTGAGCCGCACAGGGAGCAAGAAAAACAGTGCTACATTTAAATCAAATGCAGCAGA AGTCACTCCTGATCAGATGAGGAGCTCTGCTTGTAAGATGATAAGAACACTGGTTTCACT TATGAGGACCTTGGACCAAATGCCAGAGGAGAGGACCATTCTAATGAAGCTGCTATACTA CGATGATGTCACACCTGAAGATTACGAGCCACCCTTTTTTAAGTGTTGCGCTGACAACGA GGCCATAAATATATGGAACAAGAACCCCTTGAAGATGGAAGTTGGAAATGTCAATAGCAA GCATCTCGTGTTAGCTTTGAAGGTCAAGAGTGTCCTTGACCCTTGTGATGATAACAATGT CAACAGTGAAGATGATAATATGAGCTTGGATAATGAATCTGACCAAGATAATGATTTTTC TGACACTGAGGTTCGCCCATCTGAAGCAGAGCGTTACATTGTTGCTCCAAATGATGGGAC TTGCAAAGGTCAAAATGGTACAATCTCAGAAGATGATACTCAAGATCCTGTTCACGAGGA AGAGCTAACAGCTCAAGTAAGAGAGTGGATATGCTCAAGAGACACTGAAAGTCTTGAGGT TTCAGATGTCCTTGTTAATTTCCCCGACATATCAATGGAAATGGTTGAAGATATTATGGA GAGGCTACTTAAAGATGGTTTACTATCCAGAGCAAAAAAGGATAGTTATTCTGTTAATAA GATTGCTGATCCTACAACACCACACATAAAGAAAGAGGTCATCATGCAAAATGTCTCACC TACTGAAGGAACTAAAAATAGCAATGGTGATCTGATGTATATGAAGGCACTGTACCATGC ACTTCCAATGGATTATGTGTCAGTAGGCAAACTTCATGGCAAGCTAGATGGGGAGGCCAG CCAGAACATGGTTCGTAAGTTGATTGAAAAAATGGTGCAAGACGGATATGTCAAGAATTC AGCCAACCGAAGACTAGGCAAAGCTGTCATTCATTCTGAAGTCACCAACAGAAAGCTCCT TGAGATAAAAAAGATTCTGGAAGTCGATATAGCCGAACAAATGGCCATTGATACCAATGC AGAACCTGGTGAGCCTGAGCGCAAAGACCACCTGAGTGGCCATGAAATGAGAGATGGATC GACGATGGGTTGCCTCCAGTCCGTCGGATCTGACCTCACCCGCACCCGGGAGCTTCCGGA GCCGCAGCAGAACGTGTCCATGCAGAGCGGGCAGGAAGCTTCCACGGTGGATAAGGATCC AAGCAGGACTCCTACAAGCGTGCGCGAGCAGGCGTCCGTTTGTTCCCTGGAGAGTGGGGT TCTCGGGCAGAAGGTCAGAAAGTCTTTGGCTGGTGCTGGCGGGACGCAGTGCTCGCAGGA CAAGCGATTCAGGAAGGCCAGCACGGTGAAGGAGCCGATCCTCCAGTACGTCAAGCGCCA GAAGTCCCAAGTTCAAGTTCAAGTTCAGTGAGGGTTCGTGTCGCAAGCGTCAGGAGCAAC TAACATCGTAGTTCAGGTGCAGAAGACCACAAGTAGATATATCCATCCTATTCCTAGTTC CGGTGCTCAAGTTTGTGCAGATAGTCAGAGAGCACTCACGCACACGTAGATATCTGTCCA TGCCGCTGTCCCAAATGGCAAATGGAGATAGACGCTACTATGTGCTAACACACACTCAAA TTAAGCATTCAAAACGC