Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0504800-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:19507194:19509152:1 gene:Os09g0504800 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA-splicing endonuclease, subunit Sen54, N-terminal domain containing protein. (Os09t0504800-01)
Sequence	ATGCCGAAGCCCACGCGCGCCGTCGACCACCGGCGGCGGAGGAGCGGGCGAGCTCCGGCG ATCGCCGCCGTCGCCGTTGCCGCGGAGGATGATGGCGAGGAGCACCATCTCAATCCGTTC TTGGACGCCGCCCCGTCGTCGTCTTCGTCGAGAGTCCAGTTCAGGAAGGTGGCGTCGCGC GCGGTGTGGCTGGAGGAGGCTGGTGCGGCGGAGGTTGTGGACAGCAAGGGCAAGCTCTGG CTGACCACCGGTGTCAACCGGGACGGCAAGCTGTACTACAATGTCGAGGAGATTGGGTTC TTGGCAGAAAGAGGGGCATTGGTTCTTCTTGATTACGAGGGTGAAACAATTGGAATGGAG GAAATCTACGGAAAGATTGCTGGAGGGAAATATGGGTGCTCCTGGGATGCCTTCCAAGCT TACAAGCACTTGAAGTTGCTCGGCTATATTATTGGACGATATGGCGTTCCCTGGACAGTT AAGCGTAGCCATACTTACAGCGTCACTGATGCCTCCACAAGTGTGGTTGAAACTGATCAG ATTCAGAGCTTAAATAGAGTCGGTGGTGCCTCCAATGACATAACTAAATTGCTCAAGGAA ATGTGCATAGATGATATGCATCCATCCTTTGAAGTGTATCTACCGAATAGCAAATTTAAG AAGACATCCCCAGGAGACCCTAGTTTCGTCCTATGCCTATTAAGCAACAAACCACCATCA AGGGAAGAACTAGAAACCGTTGAAAACAAGTTTGAGGGCATTCCTCTGAAATTTTGCCAT GTTGACAACGGACGGGTCAGCTTCCTCTCCTCCAACAAAGCTGCTCTCCCTAGTTTGCCC TGA

Peptide Sequence

PEP ID	Os09t0504800-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:19507194:19509152:1 gene:Os09g0504800 transcript:Os09t0504800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA-splicing endonuclease, subunit Sen54, N-terminal domain containing protein. (Os09t0504800-01)
Sequence	MPKPTRAVDHRRRRSGRAPAIAAVAVAAEDDGEEHHLNPFLDAAPSSSSSRVQFRKVASR AVWLEEAGAAEVVDSKGKLWLTTGVNRDGKLYYNVEEIGFLAERGALVLLDYEGETIGME EIYGKIAGGKYGCSWDAFQAYKHLKLLGYIIGRYGVPWTVKRSHTYSVTDASTSVVETDQ IQSLNRVGGASNDITKLLKEMCIDDMHPSFEVYLPNSKFKKTSPGDPSFVLCLLSNKPPS REELETVENKFEGIPLKFCHVDNGRVSFLSSNKAALPSLP

Transcript Sequence

Transcript ID	Os09t0504800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:19507194:19509152:1 gene:Os09g0504800 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA-splicing endonuclease, subunit Sen54, N-terminal domain containing protein. (Os09t0504800-01)
Sequence	AAAAATTACGGAAGTGGCCATGCCGAAGCCCACGCGCGCCGTCGACCACCGGCGGCGGAG GAGCGGGCGAGCTCCGGCGATCGCCGCCGTCGCCGTTGCCGCGGAGGATGATGGCGAGGA GCACCATCTCAATCCGTTCTTGGACGCCGCCCCGTCGTCGTCTTCGTCGAGAGTCCAGTT CAGGAAGGTGGCGTCGCGCGCGGTGTGGCTGGAGGAGGCTGGTGCGGCGGAGGTTGTGGA CAGCAAGGGCAAGCTCTGGCTGACCACCGGTGTCAACCGGGACGGCAAGCTGTACTACAA TGTCGAGGAGATTGGGTTCTTGGCAGAAAGAGGGGCATTGGTTCTTCTTGATTACGAGGG TGAAACAATTGGAATGGAGGAAATCTACGGAAAGATTGCTGGAGGGAAATATGGGTGCTC CTGGGATGCCTTCCAAGCTTACAAGCACTTGAAGTTGCTCGGCTATATTATTGGACGATA TGGCGTTCCCTGGACAGTTAAGCGTAGCCATACTTACAGCGTCACTGATGCCTCCACAAG TGTGGTTGAAACTGATCAGATTCAGAGCTTAAATAGAGTCGGTGGTGCCTCCAATGACAT AACTAAATTGCTCAAGGAAATGTGCATAGATGATATGCATCCATCCTTTGAAGTGTATCT ACCGAATAGCAAATTTAAGAAGACATCCCCAGGAGACCCTAGTTTCGTCCTATGCCTATT AAGCAACAAACCACCATCAAGGGAAGAACTAGAAACCGTTGAAAACAAGTTTGAGGGCAT TCCTCTGAAATTTTGCCATGTTGACAACGGACGGGTCAGCTTCCTCTCCTCCAACAAAGC TGCTCTCCCTAGTTTGCCCTGATGAGATAGCAGCAGGAGAATCTGTTACTGTTAGTTTTT TCTGCTTCTGATCTTGTGACGTACATCACTTGGTATTAGATGCAATTCTGGTGTTCTTGT ATAACTTCAGATCAGCATTAACACTTACGGAGGATTTTTCAGAGGAATTATTACCATGTT TTGTCTGC