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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0504700-03
CDS Infomation

cds chromosome:IRGSP-1.0:9:19503401:19506088:-1 gene:Os09g0504700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-02);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-03)
Sequence

ATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGT
GATAAAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCG
GTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAA
GTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGG
CAGCCTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAA
AGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAG
ACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAAC
AAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAG
CAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAAT
TTCCACCGTATTTACCTTCCAAACTCTGATAGTTAA

Peptide Sequence

PEP ID

Os09t0504700-03
PEP Infomation

pep chromosome:IRGSP-1.0:9:19503401:19506088:-1 gene:Os09g0504700 transcript:Os09t0504700-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-02);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-03)
Sequence

MSTVSGTRRAPRRQSQDGPGDKVVVNLDAISSPVVGSRRAVPTSTGARASPIDVEALDDE
VQTLSASQVPPPRRNRRTRRQPVAVVDLEVDASREGNKRQRVAPVIHCLSPERGEGSSLK
TSNEPPKAKEPVFNCPVCWNKLEEPSTTICGHIFCTTCIKQAIQIQKKCPTCRKSLRANN
FHRIYLPNSDS

Transcript Sequence

Transcript ID

Os09t0504700-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:19503401:19506088:-1 gene:Os09g0504700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-02);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0504700-03)
Sequence

TTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTC
CTGGTGATAAAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTC
GCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATG
ATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTA
GGAGGCAGCCTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAAC
GTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCT
TGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTT
GGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCA
TCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGA
ACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAA
AGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACAGGAGT
TCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGA
CCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATC
AGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATAC
ACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTAT
TTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAA
TCAGCTTG