Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0500600-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:19369185:19382948:1 gene:Os09g0500600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:topoisomerase 3 description:Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2. (Os09t0500600-01)
Sequence

ATGGCGCCCACGGTTCTGATGGTCGCGGAGAAGCCCAGCATCGCGCTCTCCATCGCCTCC
GCCCTCTCCGGCGGCCGCATGTCTACAAGGAAGGGAAGTACAGATGTCCATGAGTTTGAT
GGGATGTTTCAGGGTTCTCATGCATTTTTCAAAGTGACATCAGTCATTGGACATGTCTTG
AGTGTAGATTTTCCACCTGCATATCAGAATTGGGAAGGGACTGATCCAATGGATCTATTT
GTGGCTCCAGTTCTGCGATCTGAATGCAACCCTAAGGCTCATATCCGCAGGCATCTAGCT
CAGGAAGCTCGAGGCTGCACCTACTTGGTACTCTGGCTTGATTGTGACCGAGAAGGAGAA
AACATATGCTATGAAGTAATTGATTGCACTGGAATTCCTAAAAGTGAGGTTGGCAGAAGA
ATTTTCCGAGCCAAATTTTCGTCCGTTACTGAGAAAGATATAATGGATGCTATGAATAAT
CTTGTTTTGCCAAGTAAAGATGAGGCACTAGCAGTTGATGCTCGCCAAGAAATTGACTTG
AAGGTAGGAGTAGCATTTACTCGATTTCAAACCAGATATTTTCAAGGAAAATATGGAAAT
CTCGACTCAAGAGTAATTTCGTATGGTCCATGCCAAACACCTACACTTGGATTCTGTGTA
CAACGCTATCAGCAGATTACCACATTCAAACCAGAGAAATTTTGGTCCTTGAAAACTTAT
GTTATCAAGGATGGTAATGAAATTCAGCTTGAATGGGATAGGAAGAAACTTTTTGATTTT
GATGTTACTGTAATGTTCCAAAAGATGGTGGCCAGTGATGGTATTTTAAAAGTAACCGAC
ATATCAGTGAAGGAAGAGTGCAAAGCCCGCCCGCCTGGCCTTAATACAGTTAATTTGCTT
AAGGTTGCATCAAGTGCACTAGGTATTGGACCTCAGACAGCAATGCACTTGGCAGAAAGG
CTTTATACCCAAGGATTCATCAGTTATCCACGTACAGAGAGCACTGCCTATCCTTCATCA
TTTGATTTTAGAAGTGCACTCGCTGCACTTGCACATAATCCTTTGTGGTCCAATGATGTT
CGGACGTTACTGGACACTGGGTTTGTTAAGCCCAAACAGGGTCATGATGCTGGGGACCAT
CCCCCAATAACTCCAATGAGATTGGCAACAGAAGAAGCTTTGGGAACTGATGCTTGGAGG
CTGTACCAGTACATTTGTCAGCATTTTATTGGCACTGTCAGTCCTGATTGTAGATATACG
AGGACTTCCATTGAGTTCACTTCAGGTGGAGAGACTTTCCACTGTGTTGGCAACCGGGTC
ACTTCTAAAGGATTTACTTCTATTATGCCATGGCTGGCTGTGAGTGAGAATAATATCCCT
GCATATAAAAAGGGCGATGCTGTTAGCATCCATAAGGTTGACATATATGAGGGTAGCACC
ACACCTCCTGACTACCTTAGTGAGAGTGAATTGATCTCTCTCATGGAGAAGAATGGCATA
GGTACAGATGCATCAATTCCTGTGCATGTAAACAACATCTGCGAGCGTAATTATGTTCAG
GTGAATTCCGGAAGAAGATTAGTACCAACACCCCTGGGAACTACATTGATAAGAGGGTAT
CAGTGCATTGATGCTGATCTGTGCTTACCAGATATCCGAAGGTTTATTGAGCAGCAGATT
ACTCTAATTGCAAAAGGTGAAGCTGACCATCTTCAAGTTGTGCAGCATGTTCTTCAGCAG
TTTATGAAAAAGTACTCGTACTTTGTGAAAAAGATTGAAAACATGGATGCTTTGTTCGAA
GCACAGTTTTCACCTTTGGCTGACTCTGGACGTTTACTGAGCAAGTGTGGAAAATGTGCT
CGGTATATGAAGTACATTTCCACTCAGCCAATGAGGCTGTACTGTGTAACTTGTGAAGAG
GTCTACTATCTTCCCCAGAACGGTTCCATTAAGCTTTACAAGGAAATCATTTGCCCCCTT
GATGGGTTTGAGTTGCTACTGTTTTCAATGGTTGGCCCTGATGCAAAATCCTTCCCACTG
TGTCCTTTTTGCTACAACAGTCCTCCATTTGAAGGCATCGACAAACTCTTCGGTGCACTC
AAGCTTGATGACACTGGCAAGGTTGGGAAAGGGGCTGGCATGCCATGCTTCCTCTGCCTG
CACCCCACATGTAAACAATCTATGATCACTCAAGGAGTTTGTGCTTGTCCTGAGTGTACT
GGTACCCTAATTCTTGATCCAGTCAGCGCACCCAAATGGCGGCTTTACTGCAATAGATGT
AACTGCATTGTCCTGCTCCCACATGCCGCTCATAAGATCAGTACTACAGATAAGAAGTGC
CCAACATGTGAGTCTACTATCATCGAAGTTGATTTTAACAAGAAAACTACCCCACTTAAG
GATGGAGCTACTTTGCATGAGGGTTGCATCTTGTGCGATGAGCTGTTGCATTCGCTCATT
GAGATGAAGCATGGGAAGTCATTTTTTATGAGGAGAGGTAGAGGAAGAGGCAGGGGTAGA
GGTCGAGGGAGAGGAAGCAGTAGGGGAAGACGGGGGAGCTCAAGACACGATGATCCTAAG
ATGAGCTTCAGAGATTTCTGA

Peptide Sequence

PEP ID

Os09t0500600-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:19369185:19382948:1 gene:Os09g0500600 transcript:Os09t0500600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:topoisomerase 3 description:Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2. (Os09t0500600-01)
Sequence

MAPTVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHVL
SVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREGE
NICYEVIDCTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEIDL
KVGVAFTRFQTRYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTY
VIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASDGILKVTDISVKEECKARPPGLNTVNLL
KVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDV
RTLLDTGFVKPKQGHDAGDHPPITPMRLATEEALGTDAWRLYQYICQHFIGTVSPDCRYT
RTSIEFTSGGETFHCVGNRVTSKGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIYEGST
TPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTLIRGY
QCIDADLCLPDIRRFIEQQITLIAKGEADHLQVVQHVLQQFMKKYSYFVKKIENMDALFE
AQFSPLADSGRLLSKCGKCARYMKYISTQPMRLYCVTCEEVYYLPQNGSIKLYKEIICPL
DGFELLLFSMVGPDAKSFPLCPFCYNSPPFEGIDKLFGALKLDDTGKVGKGAGMPCFLCL
HPTCKQSMITQGVCACPECTGTLILDPVSAPKWRLYCNRCNCIVLLPHAAHKISTTDKKC
PTCESTIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGR
GRGRGSSRGRRGSSRHDDPKMSFRDF

Transcript Sequence

Transcript ID

Os09t0500600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:19369185:19382948:1 gene:Os09g0500600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:topoisomerase 3 description:Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2. (Os09t0500600-01)
Sequence

GGGGGGGGGGGGGGGGGCCCAAAACCCAGCCCACTAAAACCACACTCCGATCCGAAACCG
TCTTCGTCTTCGTCTCCGGCCGCCTCTCCGCCTCCACTCTTCCTCCTCCCGGCGGCGAGC
TTCCCCTCTCCGCCCGCGCCCATGGCGCCCACGGTTCTGATGGTCGCGGAGAAGCCCAGC
ATCGCGCTCTCCATCGCCTCCGCCCTCTCCGGCGGCCGCATGTCTACAAGGAAGGGAAGT
ACAGATGTCCATGAGTTTGATGGGATGTTTCAGGGTTCTCATGCATTTTTCAAAGTGACA
TCAGTCATTGGACATGTCTTGAGTGTAGATTTTCCACCTGCATATCAGAATTGGGAAGGG
ACTGATCCAATGGATCTATTTGTGGCTCCAGTTCTGCGATCTGAATGCAACCCTAAGGCT
CATATCCGCAGGCATCTAGCTCAGGAAGCTCGAGGCTGCACCTACTTGGTACTCTGGCTT
GATTGTGACCGAGAAGGAGAAAACATATGCTATGAAGTAATTGATTGCACTGGAATTCCT
AAAAGTGAGGTTGGCAGAAGAATTTTCCGAGCCAAATTTTCGTCCGTTACTGAGAAAGAT
ATAATGGATGCTATGAATAATCTTGTTTTGCCAAGTAAAGATGAGGCACTAGCAGTTGAT
GCTCGCCAAGAAATTGACTTGAAGGTAGGAGTAGCATTTACTCGATTTCAAACCAGATAT
TTTCAAGGAAAATATGGAAATCTCGACTCAAGAGTAATTTCGTATGGTCCATGCCAAACA
CCTACACTTGGATTCTGTGTACAACGCTATCAGCAGATTACCACATTCAAACCAGAGAAA
TTTTGGTCCTTGAAAACTTATGTTATCAAGGATGGTAATGAAATTCAGCTTGAATGGGAT
AGGAAGAAACTTTTTGATTTTGATGTTACTGTAATGTTCCAAAAGATGGTGGCCAGTGAT
GGTATTTTAAAAGTAACCGACATATCAGTGAAGGAAGAGTGCAAAGCCCGCCCGCCTGGC
CTTAATACAGTTAATTTGCTTAAGGTTGCATCAAGTGCACTAGGTATTGGACCTCAGACA
GCAATGCACTTGGCAGAAAGGCTTTATACCCAAGGATTCATCAGTTATCCACGTACAGAG
AGCACTGCCTATCCTTCATCATTTGATTTTAGAAGTGCACTCGCTGCACTTGCACATAAT
CCTTTGTGGTCCAATGATGTTCGGACGTTACTGGACACTGGGTTTGTTAAGCCCAAACAG
GGTCATGATGCTGGGGACCATCCCCCAATAACTCCAATGAGATTGGCAACAGAAGAAGCT
TTGGGAACTGATGCTTGGAGGCTGTACCAGTACATTTGTCAGCATTTTATTGGCACTGTC
AGTCCTGATTGTAGATATACGAGGACTTCCATTGAGTTCACTTCAGGTGGAGAGACTTTC
CACTGTGTTGGCAACCGGGTCACTTCTAAAGGATTTACTTCTATTATGCCATGGCTGGCT
GTGAGTGAGAATAATATCCCTGCATATAAAAAGGGCGATGCTGTTAGCATCCATAAGGTT
GACATATATGAGGGTAGCACCACACCTCCTGACTACCTTAGTGAGAGTGAATTGATCTCT
CTCATGGAGAAGAATGGCATAGGTACAGATGCATCAATTCCTGTGCATGTAAACAACATC
TGCGAGCGTAATTATGTTCAGGTGAATTCCGGAAGAAGATTAGTACCAACACCCCTGGGA
ACTACATTGATAAGAGGGTATCAGTGCATTGATGCTGATCTGTGCTTACCAGATATCCGA
AGGTTTATTGAGCAGCAGATTACTCTAATTGCAAAAGGTGAAGCTGACCATCTTCAAGTT
GTGCAGCATGTTCTTCAGCAGTTTATGAAAAAGTACTCGTACTTTGTGAAAAAGATTGAA
AACATGGATGCTTTGTTCGAAGCACAGTTTTCACCTTTGGCTGACTCTGGACGTTTACTG
AGCAAGTGTGGAAAATGTGCTCGGTATATGAAGTACATTTCCACTCAGCCAATGAGGCTG
TACTGTGTAACTTGTGAAGAGGTCTACTATCTTCCCCAGAACGGTTCCATTAAGCTTTAC
AAGGAAATCATTTGCCCCCTTGATGGGTTTGAGTTGCTACTGTTTTCAATGGTTGGCCCT
GATGCAAAATCCTTCCCACTGTGTCCTTTTTGCTACAACAGTCCTCCATTTGAAGGCATC
GACAAACTCTTCGGTGCACTCAAGCTTGATGACACTGGCAAGGTTGGGAAAGGGGCTGGC
ATGCCATGCTTCCTCTGCCTGCACCCCACATGTAAACAATCTATGATCACTCAAGGAGTT
TGTGCTTGTCCTGAGTGTACTGGTACCCTAATTCTTGATCCAGTCAGCGCACCCAAATGG
CGGCTTTACTGCAATAGATGTAACTGCATTGTCCTGCTCCCACATGCCGCTCATAAGATC
AGTACTACAGATAAGAAGTGCCCAACATGTGAGTCTACTATCATCGAAGTTGATTTTAAC
AAGAAAACTACCCCACTTAAGGATGGAGCTACTTTGCATGAGGGTTGCATCTTGTGCGAT
GAGCTGTTGCATTCGCTCATTGAGATGAAGCATGGGAAGTCATTTTTTATGAGGAGAGGT
AGAGGAAGAGGCAGGGGTAGAGGTCGAGGGAGAGGAAGCAGTAGGGGAAGACGGGGGAGC
TCAAGACACGATGATCCTAAGATGAGCTTCAGAGATTTCTGAAAGTTTCAGGGCTTAAAC
CTATATGTAAGTACATGCAACACTAGTTAGAAACTTAACCACCACTGTTGTTCTTTCCAT
TTTCTTCCTGTATAAACCCTAGATCAAGTTATCTTTCATGGTTTTGCTACCATGCTAAGA
CTGTTATTTCTGTTTCTATTGGATGAAGTTAGGCTTGTTTCCCAGGTTGAAGAATGGCTG
TGTAGCATCGATCTTATGTAAACAGTGGTTGGTAAATGGTAACAGGGCCAACGGTTGCAA
GGGTTGGTGAGATACTGACAATTGAGAACTTCTGGGTCGTAATGCGTTTACCAACGACAC
AACACGAGGCAAATTGCTACCC