Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0497400-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:19235432:19238670:1 gene:Os09g0497400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF850, transmembrane eukaryotic family protein. (Os09t0497400-01);Similar to Protein pob. (Os09t0497400-02)
Sequence

ATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCG
TCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAAC
CTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTAC
ACTAACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCT
GCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATA
GTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCT
AAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTG
AGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGT
TTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAG
ATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAA
GACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAG
GAAGTGCTGAGGAAGCTTCTGAAGAAATGA

Peptide Sequence

PEP ID

Os09t0497400-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:19235432:19238670:1 gene:Os09g0497400 transcript:Os09t0497400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF850, transmembrane eukaryotic family protein. (Os09t0497400-01);Similar to Protein pob. (Os09t0497400-02)
Sequence

MVLIGVLRYFVAKLMRSPSASPSPDPKLVKEGQVVIRARNLRINSQYIPAKAFKSRKVYY
TNEENGLLHVPKEEAQKAQAAMFSDPNMAMDMMKKNLSMIVPQTLTFAWVNFFFSGFVAA
KIPFPLTPRFRGMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENANDDAQK
MMQMGGGFGGNPTMGLAAEKDNLDIIQHDWALPKMEHHAEEVLRKLLKK

Transcript Sequence

Transcript ID

Os09t0497400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:19235432:19238670:1 gene:Os09g0497400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF850, transmembrane eukaryotic family protein. (Os09t0497400-01);Similar to Protein pob. (Os09t0497400-02)
Sequence

GATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGC
GTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAA
CCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTA
CACTAACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGC
TGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGAT
AGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGC
TAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCT
GAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGG
TTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAA
GATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAA
AGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGA
GGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTAC
TACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTAT
CTGTATAACTTATGGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATA
CGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGC