Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0488800-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:18852951:18855646:-1 gene:Os09g0488800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus capsid, C-terminal domain containing protein. (Os09t0488800-01)
Sequence	ATGGCCATGGCGGCCGCCGCAGCCGAGGCGTTCGGCACGGCGGCGGCGACGTCGACGCCG CCGGTGCAGGCGACGCGGCAGGACGTGCAGGCCGCCATCGCCAAGGCGGTCGAGCTGCGG GCGCTCCACGCCGCGCTGCTGCAGCGCGGCGGCGGCGGCGTAGGCGGCGGCGCCAGCGCC AGCCGCAGCCCGGCCATCATCCGCCTCCCGCCGGCCGCGTCCCCCGCGCTCTCCAGGGCG GGGGCGGCGGCGGCGGCGGTGGCCACCGTCGACGAGGACTACCCGGTGTTTACTCCGGCT TACGATGAGGAGCAAATGGCCGGACTCAGCCACATTTGCCAGGACAACCGGAGCCGGTCG GAGAACTGGAGCGGCATCGCGTTGGGCGGCGGCGGCAGCGGCGACGACGACGACGACGCG GCCTTCTCCGACTACGACAACCTCAACGCCTTCTCGTCCTCGAACAGCGAGCTCCGCTTC CCGTCGTCCACCGACCATCACCGGCGGCACAAGGTCCACCCGGCGTTCTTGCACTCCGCG CCGTCGGCCGACCGTTTCCTCGCGTCGGCGGGGAGGGCGACCATGGCCGGCACGGCGGAG CTGCTCAAGGCGCCGTCGACGTGCGGCAGCGCGTTCCGGCCGGCGACGATCGGCCGGGAC CACGGCATCGACGTCGGGGCCCTCAAGTTCCTCGCCAGCAGCGGCGCGCCGCTCTCGGCG GCGGCGGCGGCGGCGCAGCCCCGGCCGGCGAAGCACAGAAGGGCGCAGATCCTCTCGTGG CTCTTCCCGAGGGCGAAGAAGAAGGCGAAGCCGATGTCGCCGAGCGCCATCGAGCGGGAG AACATGTCGCAGCTGCTCAAGGAGTGGGGGTTGCTGTCGCTCGACTCGCTCCGGCGAGAG CTCGCCGACGCGAACGCGCACCGCGACGCCGCGCTGCAGGAAGCCGCCGAGATGAGGTCG TCCCTGGGAGAGCTCACCACCAAGCTCGCCGGCCTCGAGGCCTACTGCTCGGAGCTCAAG AAGGCACTGCGACTAGCGACGAGCTCAACCAGCAACGCTCAACCATCATCATCCTCCATG TCGAGGAGATCAACGCGATCGATCGGAGCAAGCCAGGAGCTCCCGGGGCCGGTCAGCCAT GAAGCCATGGTGGAAGGCTTCTTGCAGATCGCCTCCGAGGCGCGGCTTTCGGTGAAGCAA TTCTGCAAGGCATTGATCCAGCAGGTCGAAGAACCTGACAATGGTTTGATAGAAAAACTA AACATTCTTCTCCAACCTTACCAGCTCATGATCACTGACAACAAGCATTGCTCCAAGCTG GTGCTGTACCATCTGGAAGCTCTGATGAACCAGGCAATGTACCAGGACTTCGAGAACTGC ACGTTCCAGAAGAACGGCTCGCCACGGTGCCTCGATCCCAAGCAAGGATCCCAGGAGAGC TTCGCCTCCTTCGTCGCACTGCGCAACCTGAGCTGGAACGAGGTGCTCAGGAAGGGCACC AAGTACTACAGCGAGGACTTCAGCCGGTTCTGCGACCAGAAGATGAGCTGCATTGTGTCC ACCCTGAAGAATTGGTCCCGGCCATGGCCGGAGCAGCTGCTGCAGTGCTTCTTCGTCGCT GCCAAGTGCGTCTGGCTGCTCCACCTCCTGGCCTTCTCCTTCACCCCCGCGCTGACGATC ATGCGGGTCGAAGAGAGCCGCGTATTCGATCAGATGTACATGGAGGACATCCTACCTGAC AAGCAGCAGCTGCACAATCCTTGTCAGGTAAAGATCATGGTAATGCCGGGGTTCTATGTC CAATATCGAGTGCTCAAGTGTAGAGTGCTCACAACTTGA

Peptide Sequence

PEP ID	Os09t0488800-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:18852951:18855646:-1 gene:Os09g0488800 transcript:Os09t0488800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus capsid, C-terminal domain containing protein. (Os09t0488800-01)
Sequence	MAMAAAAAEAFGTAAATSTPPVQATRQDVQAAIAKAVELRALHAALLQRGGGGVGGGASA SRSPAIIRLPPAASPALSRAGAAAAAVATVDEDYPVFTPAYDEEQMAGLSHICQDNRSRS ENWSGIALGGGGSGDDDDDAAFSDYDNLNAFSSSNSELRFPSSTDHHRRHKVHPAFLHSA PSADRFLASAGRATMAGTAELLKAPSTCGSAFRPATIGRDHGIDVGALKFLASSGAPLSA AAAAAQPRPAKHRRAQILSWLFPRAKKKAKPMSPSAIERENMSQLLKEWGLLSLDSLRRE LADANAHRDAALQEAAEMRSSLGELTTKLAGLEAYCSELKKALRLATSSTSNAQPSSSSM SRRSTRSIGASQELPGPVSHEAMVEGFLQIASEARLSVKQFCKALIQQVEEPDNGLIEKL NILLQPYQLMITDNKHCSKLVLYHLEALMNQAMYQDFENCTFQKNGSPRCLDPKQGSQES FASFVALRNLSWNEVLRKGTKYYSEDFSRFCDQKMSCIVSTLKNWSRPWPEQLLQCFFVA AKCVWLLHLLAFSFTPALTIMRVEESRVFDQMYMEDILPDKQQLHNPCQVKIMVMPGFYV QYRVLKCRVLTT

Transcript Sequence

Transcript ID	Os09t0488800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:18852951:18855646:-1 gene:Os09g0488800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus capsid, C-terminal domain containing protein. (Os09t0488800-01)
Sequence	GCGTTCCAAGAATCCTTGGGGCAAGCGAAGGCGAAGCAGCCTTTGACTCGCCTGACATGG CCATGGCGGCCGCCGCAGCCGAGGCGTTCGGCACGGCGGCGGCGACGTCGACGCCGCCGG TGCAGGCGACGCGGCAGGACGTGCAGGCCGCCATCGCCAAGGCGGTCGAGCTGCGGGCGC TCCACGCCGCGCTGCTGCAGCGCGGCGGCGGCGGCGTAGGCGGCGGCGCCAGCGCCAGCC GCAGCCCGGCCATCATCCGCCTCCCGCCGGCCGCGTCCCCCGCGCTCTCCAGGGCGGGGG CGGCGGCGGCGGCGGTGGCCACCGTCGACGAGGACTACCCGGTGTTTACTCCGGCTTACG ATGAGGAGCAAATGGCCGGACTCAGCCACATTTGCCAGGACAACCGGAGCCGGTCGGAGA ACTGGAGCGGCATCGCGTTGGGCGGCGGCGGCAGCGGCGACGACGACGACGACGCGGCCT TCTCCGACTACGACAACCTCAACGCCTTCTCGTCCTCGAACAGCGAGCTCCGCTTCCCGT CGTCCACCGACCATCACCGGCGGCACAAGGTCCACCCGGCGTTCTTGCACTCCGCGCCGT CGGCCGACCGTTTCCTCGCGTCGGCGGGGAGGGCGACCATGGCCGGCACGGCGGAGCTGC TCAAGGCGCCGTCGACGTGCGGCAGCGCGTTCCGGCCGGCGACGATCGGCCGGGACCACG GCATCGACGTCGGGGCCCTCAAGTTCCTCGCCAGCAGCGGCGCGCCGCTCTCGGCGGCGG CGGCGGCGGCGCAGCCCCGGCCGGCGAAGCACAGAAGGGCGCAGATCCTCTCGTGGCTCT TCCCGAGGGCGAAGAAGAAGGCGAAGCCGATGTCGCCGAGCGCCATCGAGCGGGAGAACA TGTCGCAGCTGCTCAAGGAGTGGGGGTTGCTGTCGCTCGACTCGCTCCGGCGAGAGCTCG CCGACGCGAACGCGCACCGCGACGCCGCGCTGCAGGAAGCCGCCGAGATGAGGTCGTCCC TGGGAGAGCTCACCACCAAGCTCGCCGGCCTCGAGGCCTACTGCTCGGAGCTCAAGAAGG CACTGCGACTAGCGACGAGCTCAACCAGCAACGCTCAACCATCATCATCCTCCATGTCGA GGAGATCAACGCGATCGATCGGAGCAAGCCAGGAGCTCCCGGGGCCGGTCAGCCATGAAG CCATGGTGGAAGGCTTCTTGCAGATCGCCTCCGAGGCGCGGCTTTCGGTGAAGCAATTCT GCAAGGCATTGATCCAGCAGGTCGAAGAACCTGACAATGGTTTGATAGAAAAACTAAACA TTCTTCTCCAACCTTACCAGCTCATGATCACTGACAACAAGCATTGCTCCAAGCTGGTGC TGTACCATCTGGAAGCTCTGATGAACCAGGCAATGTACCAGGACTTCGAGAACTGCACGT TCCAGAAGAACGGCTCGCCACGGTGCCTCGATCCCAAGCAAGGATCCCAGGAGAGCTTCG CCTCCTTCGTCGCACTGCGCAACCTGAGCTGGAACGAGGTGCTCAGGAAGGGCACCAAGT ACTACAGCGAGGACTTCAGCCGGTTCTGCGACCAGAAGATGAGCTGCATTGTGTCCACCC TGAAGAATTGGTCCCGGCCATGGCCGGAGCAGCTGCTGCAGTGCTTCTTCGTCGCTGCCA AGTGCGTCTGGCTGCTCCACCTCCTGGCCTTCTCCTTCACCCCCGCGCTGACGATCATGC GGGTCGAAGAGAGCCGCGTATTCGATCAGATGTACATGGAGGACATCCTACCTGACAAGC AGCAGCTGCACAATCCTTGTCAGGTAAAGATCATGGTAATGCCGGGGTTCTATGTCCAAT ATCGAGTGCTCAAGTGTAGAGTGCTCACAACTTGATAAGTAGCATAATTGAGATTCATGG CTTAGCTCTCATTGACCAATAGCTTGTGTGGTTTAAGTGTAACAAACTTTATGTTCAGTA CAAAGTACAGAAATGTCAGTGTTGAACAATATGTTTGGGAGTAACTTAACAGGCCCATAA TTGGGATAATCCTTAGATAATTATTGAAATGCTTATGTATTCCTCCAATGGTATGCTATG ATCAACAAAAACATTGCA