Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0487600-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:18801173:18803450:-1 gene:Os09g0487600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os09t0487600-01)
Sequence

ATGGCGTCCCCGCTGCTGCTGCTGCTTCCGCTCGCCGTCTCGTCCCTTCTGCTGCCGTTC
GCGGCGGCCGCGCGCGTCTTCTCCGTCGCGGACTACGGCGCGGCGGGCGACGGCGCGCGG
TACGACACGGGGGCCATCCAGGCGGCCGTCGACGCGTGCGCGGCGGCGGGGGGCGGGCGC
GTCCTCCTCCCGGCGCCGGGGGACTACCTGACGGCGACCGTCCACCTCCGCTCGCGGGTG
GTGCTCGACGTCGCCCCCGGGGCGCGGCTGCTGGGCGGGACCAGGCAGGCGGACTACCCT
CCCGAGTCCCGCCGCTGGTACGTCGTCCTCGCCGAGAACACCACCGGCGCCGGGGTCACC
GGCGGCGGCGAGATCAACGGCCAGGGCGGGGCATTCGTGGTCACCCCCAACCCGCAGAAG
AACATCATGGTGAGCTGGAACGCCACCGGCGACTGCGAGGGCGACGAGTGCCGCCCGCGG
CTCGTCGGATTCATCGACTCCAAGGACGTCACGATCCACGACATCACCCTCAACCAGCCT
GCCTACTGGTGTCTGCATATTGTCAGGTGTGACAATACAATGATCCACAATGTGTCGATA
TATGGGGATTTTGACACTCCCAACAACGACGGCATCGACATTGAGGATTCAAACAACACG
GCCATCACTCATTGCCACATAGACACCGGAGACGATGCGATATGCCCCAAATCAACCACA
GGTCCTGTTTACAACTTGACGGCAACAAACTGCTGGATACGGACTAAATCTTGCGCTATC
AAGTTTGGCAGCGCTAGCTTCTTTGACTTCAAGAAGCTGGTATTTGACAACATTACAATA
GTTGATTCACATAGAGGACTTGGGATGCAGATTAGAGATGGAGGAAATGTGAGCGATGTG
GTGTTCTCAAACATCAAAATGAGCACCAGGTACTACCATCCTTTATGGTGGGGGAGAGCT
GAACCGATCTACATCACCACATGTCCAAGGCACCCAGATTCCAAAGAAGGCACCATTTCA
GACATTCAGTTCATCAACATCTCATCGGTATCAGAAAACGGAGTATTCTTGGCTGGATCG
AAGCACGGGCTGCTTCGCAACCTGAAGTTCAAGAATGTCGACCTAACCTACAAGAGATGG
ACAAACTACTCGGGAGGGCTGTATGATTACAGGCCTGGATGCCAAAAGATGGTGAAGCAC
CGAACCGGTGGTATGATGCTGGAGCACATCTCTGGCCTTGAGATCGACAATGTGAGGATG
AGATGGTCAAGAGGAAGCCTCAAAGGCTGGGATGTTGATCCTCTCCTCTTCCAGCCATCG
ACAGTCGACAAGCTGTCATTCCATGACTGGCAATCGCTGGCTGTCAGTAGGTAA

Peptide Sequence

PEP ID

Os09t0487600-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:18801173:18803450:-1 gene:Os09g0487600 transcript:Os09t0487600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os09t0487600-01)
Sequence

MASPLLLLLPLAVSSLLLPFAAAARVFSVADYGAAGDGARYDTGAIQAAVDACAAAGGGR
VLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGVT
GGGEINGQGGAFVVTPNPQKNIMVSWNATGDCEGDECRPRLVGFIDSKDVTIHDITLNQP
AYWCLHIVRCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGDDAICPKSTT
GPVYNLTATNCWIRTKSCAIKFGSASFFDFKKLVFDNITIVDSHRGLGMQIRDGGNVSDV
VFSNIKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIQFINISSVSENGVFLAGS
KHGLLRNLKFKNVDLTYKRWTNYSGGLYDYRPGCQKMVKHRTGGMMLEHISGLEIDNVRM
RWSRGSLKGWDVDPLLFQPSTVDKLSFHDWQSLAVSR

Transcript Sequence

Transcript ID

Os09t0487600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:18801173:18803450:-1 gene:Os09g0487600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os09t0487600-01)
Sequence

GAGTCAACGTCACAATGGCGTCCCCGCTGCTGCTGCTGCTTCCGCTCGCCGTCTCGTCCC
TTCTGCTGCCGTTCGCGGCGGCCGCGCGCGTCTTCTCCGTCGCGGACTACGGCGCGGCGG
GCGACGGCGCGCGGTACGACACGGGGGCCATCCAGGCGGCCGTCGACGCGTGCGCGGCGG
CGGGGGGCGGGCGCGTCCTCCTCCCGGCGCCGGGGGACTACCTGACGGCGACCGTCCACC
TCCGCTCGCGGGTGGTGCTCGACGTCGCCCCCGGGGCGCGGCTGCTGGGCGGGACCAGGC
AGGCGGACTACCCTCCCGAGTCCCGCCGCTGGTACGTCGTCCTCGCCGAGAACACCACCG
GCGCCGGGGTCACCGGCGGCGGCGAGATCAACGGCCAGGGCGGGGCATTCGTGGTCACCC
CCAACCCGCAGAAGAACATCATGGTGAGCTGGAACGCCACCGGCGACTGCGAGGGCGACG
AGTGCCGCCCGCGGCTCGTCGGATTCATCGACTCCAAGGACGTCACGATCCACGACATCA
CCCTCAACCAGCCTGCCTACTGGTGTCTGCATATTGTCAGGTGTGACAATACAATGATCC
ACAATGTGTCGATATATGGGGATTTTGACACTCCCAACAACGACGGCATCGACATTGAGG
ATTCAAACAACACGGCCATCACTCATTGCCACATAGACACCGGAGACGATGCGATATGCC
CCAAATCAACCACAGGTCCTGTTTACAACTTGACGGCAACAAACTGCTGGATACGGACTA
AATCTTGCGCTATCAAGTTTGGCAGCGCTAGCTTCTTTGACTTCAAGAAGCTGGTATTTG
ACAACATTACAATAGTTGATTCACATAGAGGACTTGGGATGCAGATTAGAGATGGAGGAA
ATGTGAGCGATGTGGTGTTCTCAAACATCAAAATGAGCACCAGGTACTACCATCCTTTAT
GGTGGGGGAGAGCTGAACCGATCTACATCACCACATGTCCAAGGCACCCAGATTCCAAAG
AAGGCACCATTTCAGACATTCAGTTCATCAACATCTCATCGGTATCAGAAAACGGAGTAT
TCTTGGCTGGATCGAAGCACGGGCTGCTTCGCAACCTGAAGTTCAAGAATGTCGACCTAA
CCTACAAGAGATGGACAAACTACTCGGGAGGGCTGTATGATTACAGGCCTGGATGCCAAA
AGATGGTGAAGCACCGAACCGGTGGTATGATGCTGGAGCACATCTCTGGCCTTGAGATCG
ACAATGTGAGGATGAGATGGTCAAGAGGAAGCCTCAAAGGCTGGGATGTTGATCCTCTCC
TCTTCCAGCCATCGACAGTCGACAAGCTGTCATTCCATGACTGGCAATCGCTGGCTGTCA
GTAGGTAATGGAAGAGCAAGCCTACTGAACATCACATTTGTACAAGTATCTGTATCACAA
TCTGAGTGGTGATTCTTTTCTGAAACGTGTAAATAAAGATCACATGAAAGGCAATGGTCT
TACCATGTTGATAATCATCGCTTGAATGGCATAAGGTTCTTACCAGTCAATAAAAATCCT
CAAGTCCCAACTCCCTGTAAGCTTCAGCGAATGGGCGAGAATGGCTGCTGAATTGATTTC
TGAGTACTGAACTGACTGAATCAGATACAATCAAATTCAATCTCAATTGTCTATAATAAA
CCTATGCTGTCATTCTGATCT