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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0482780-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:18611431:18612411:-1 gene:Os09g0482780 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27 description:FAS1 domain domain containing protein. (Os09t0482780-01)
Sequence

ATGATCTCAGGGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTC
GCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAG
AGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCG
CCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACG
TTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAG
ACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAG
TCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTC
CCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACG
TTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAG
TCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTG
TACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCG
GCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGG
TGA

Peptide Sequence

PEP ID

Os09t0482780-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:18611431:18612411:-1 gene:Os09g0482780 transcript:Os09t0482780-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27 description:FAS1 domain domain containing protein. (Os09t0482780-01)
Sequence

MISGIRIRGEEKMEFKAAMFAAAVVAVLLSSPSPALAQKKSPPAAPSPVSLPPSLAPAPA
PAPHYVDLAELLSVAGPFHTFLNYLEKTNVIETFQSQANKTKEGVTIFVPKDSAFAAIKQ
STFSNLTGDQLKTLLLYHAFPKFYSLAEFKNLSELNPVNTFAGAPYTLNLTDDMGTISVQ
SMWSRPKISSSVYATRPVAVYALNKVLLPMQIFSKDPPAAARRTRRAPRAASAPASSMAW

Transcript Sequence

Transcript ID

Os09t0482780-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:18611431:18612411:-1 gene:Os09g0482780 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27 description:FAS1 domain domain containing protein. (Os09t0482780-01)
Sequence

ACATTTTGGTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACAT
TGCTTAAATGATCTCAGGGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGC
CATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCA
GAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGC
GCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTT
CCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGC
GAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCAT
CAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCA
CGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGT
GAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTC
CGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGT
GGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCC
GGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAAT
GGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAG
AGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTCATGCTTCTCC