Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0479400-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:18387472:18391684:1 gene:Os09g0479400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phenylalanyl-tRNA synthetase, class IIc family protein. (Os09t0479400-01)
Sequence

ATGGCGGCGGTCGCGCTGCTCTCGCCAGCGGCGGCTGCGGCGGTGGTGACAGAGGGTGAG
GAGAAGCCGCCGCTGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGCGGGCGATCGTG
GCCGACGGCGACGGGAGGGAGGCGAATGCGGCGGCGCCGGGGGCGAATTGGTGCGGGGAG
GAGGAGGTGCCGGCGCATGCAGCGGAGGGGGGCACGGTCGCCGCGATGGTGGACGAGAAT
GCGGCGGCGCCTGCAGCGGAGGGGGACACGGTGGCCGCGGCGAAGGGGGAGGCGCCTGCA
GCGGAGGGGGACATGGTGGTCGCCGCGAAGGGGGCGGCGCATGCAGCGGCGGAGGGGGAC
ACGGTGGCGGCGGCGGCGGTAGCGGGCGAGAACGAGGCGGCGCATGCACCAGCAGCGGGG
GGGAACACGGTGGCCGCGGCTGCGGATGTCAAGGGCGAGGCGCTTCAAGCGATTCCGGTG
GCCGACGAGGCGGCGGCCGTGGCGGAGGGGGTTAACGCGATCGCCGCGGCGGAGCGGGAG
GAGGACGACGAGGGGGTGAAGTGGCTGAAGCACTACTCCTCCCTCCAGAGCATACTCACC
GTCGGGGACGGGGACTTCTCCTTCTCGCTGGCGCTCGCCACCGCGTTCGGCTCCGGCGAC
AACCTCGTCGCCACCTCGCTGGACACCATTGAGGACCTGAGGGGCAAATACAGCAAAGCA
GAATCAAATATAATGGAGCTGAAAAGGATGGGGGCCACTGTTTTGCATGGCATCGATGCA
AAAAGGATGAAGGATCACACCAACCTGAAGCTGAGACGGTTTGATCGAATTATCTTCAAT
TTTCCTCATGCTGGATTCAAAGGAAAAGAGGATGATTTGCATATGATCAATTTGCACAGG
GAGTTGGTATGGGGTTTTTTTCAGAATGCAAGACACCTGCTTCGACCCTATGGTGAAATT
CATGTTAGCCACAAGATAGGATTGCCATATGACAGGTGGTGTATCGAGCATCTAGCATAT
GAGTCTTCTCTTACAATGATTGCTAAAGTTGATTTCAGAAAAGAGGACTACCCAGGTTAC
AACCAAAAGAGAGGAGACAGTGCAAAGTGTGATCAACCTTTTGAACTAGGTGCTTGCTGC
ACTTTCATGTTCATGAGAGATTTGACGAGGCTGAAAAGGGCACGTCGGAACAGGATCAAT
GCATCTTCACTGGGAATCCAAGCCCAACATGACATGCCATTTCACCCACGTCCGCTTGTT
CCAGCATATCCTCAGCCACATTTCCCTTCACAAGTCAATGCAGCTCACAGGCAAGTTCCT
CCAGAGCATTACCCCCTCGGAATTGCTCATGGGCAAGAGCCAGGTTTTCTAGATAACTTT
GGTGGCATAGAGAGGTATCCTTACCAGCGTGGCGCTATCGGGACAGTGATCGGCATGCCA
GGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAG
CCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTT
GCCCGGGAATACCCGAGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGA
GGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAATCGTTACGAGGAATCTGTTCGGAGG
CAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGTGGATACGACTGA

Peptide Sequence

PEP ID

Os09t0479400-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:18387472:18391684:1 gene:Os09g0479400 transcript:Os09t0479400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phenylalanyl-tRNA synthetase, class IIc family protein. (Os09t0479400-01)
Sequence

MAAVALLSPAAAAAVVTEGEEKPPLEEVEVEVEVVVRAIVADGDGREANAAAPGANWCGE
EEVPAHAAEGGTVAAMVDENAAAPAAEGDTVAAAKGEAPAAEGDMVVAAKGAAHAAAEGD
TVAAAAVAGENEAAHAPAAGGNTVAAAADVKGEALQAIPVADEAAAVAEGVNAIAAAERE
EDDEGVKWLKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKA
ESNIMELKRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHR
ELVWGFFQNARHLLRPYGEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGY
NQKRGDSAKCDQPFELGACCTFMFMRDLTRLKRARRNRINASSLGIQAQHDMPFHPRPLV
PAYPQPHFPSQVNAAHRQVPPEHYPLGIAHGQEPGFLDNFGGIERYPYQRGAIGTVIGMP
GTPSPMRGITRSSFPAPQEQPWRQERYIMDPEVRDDHYHFAREYPRNLQEYEMERQVMPG
GTRLRYVDFLENRYEESVRRQEHLRRLIAEYGGYD

Transcript Sequence

Transcript ID

Os09t0479400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:18387472:18391684:1 gene:Os09g0479400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phenylalanyl-tRNA synthetase, class IIc family protein. (Os09t0479400-01)
Sequence

CTCCTCCTCCTCATCCTCACGCGCGGAAACTGTTTGTACTCGAGCCCACTCCAACTCCAC
TCCACTACGCCGATCGTGTCACACGCACGCGCGCATGGCGGCGGTCGCGCTGCTCTCGCC
AGCGGCGGCTGCGGCGGTGGTGACAGAGGGTGAGGAGAAGCCGCCGCTGGAGGAGGTGGA
GGTGGAGGTGGAGGTGGTGGTGCGGGCGATCGTGGCCGACGGCGACGGGAGGGAGGCGAA
TGCGGCGGCGCCGGGGGCGAATTGGTGCGGGGAGGAGGAGGTGCCGGCGCATGCAGCGGA
GGGGGGCACGGTCGCCGCGATGGTGGACGAGAATGCGGCGGCGCCTGCAGCGGAGGGGGA
CACGGTGGCCGCGGCGAAGGGGGAGGCGCCTGCAGCGGAGGGGGACATGGTGGTCGCCGC
GAAGGGGGCGGCGCATGCAGCGGCGGAGGGGGACACGGTGGCGGCGGCGGCGGTAGCGGG
CGAGAACGAGGCGGCGCATGCACCAGCAGCGGGGGGGAACACGGTGGCCGCGGCTGCGGA
TGTCAAGGGCGAGGCGCTTCAAGCGATTCCGGTGGCCGACGAGGCGGCGGCCGTGGCGGA
GGGGGTTAACGCGATCGCCGCGGCGGAGCGGGAGGAGGACGACGAGGGGGTGAAGTGGCT
GAAGCACTACTCCTCCCTCCAGAGCATACTCACCGTCGGGGACGGGGACTTCTCCTTCTC
GCTGGCGCTCGCCACCGCGTTCGGCTCCGGCGACAACCTCGTCGCCACCTCGCTGGACAC
CATTGAGGACCTGAGGGGCAAATACAGCAAAGCAGAATCAAATATAATGGAGCTGAAAAG
GATGGGGGCCACTGTTTTGCATGGCATCGATGCAAAAAGGATGAAGGATCACACCAACCT
GAAGCTGAGACGGTTTGATCGAATTATCTTCAATTTTCCTCATGCTGGATTCAAAGGAAA
AGAGGATGATTTGCATATGATCAATTTGCACAGGGAGTTGGTATGGGGTTTTTTTCAGAA
TGCAAGACACCTGCTTCGACCCTATGGTGAAATTCATGTTAGCCACAAGATAGGATTGCC
ATATGACAGGTGGTGTATCGAGCATCTAGCATATGAGTCTTCTCTTACAATGATTGCTAA
AGTTGATTTCAGAAAAGAGGACTACCCAGGTTACAACCAAAAGAGAGGAGACAGTGCAAA
GTGTGATCAACCTTTTGAACTAGGTGCTTGCTGCACTTTCATGTTCATGAGAGATTTGAC
GAGGCTGAAAAGGGCACGTCGGAACAGGATCAATGCATCTTCACTGGGAATCCAAGCCCA
ACATGACATGCCATTTCACCCACGTCCGCTTGTTCCAGCATATCCTCAGCCACATTTCCC
TTCACAAGTCAATGCAGCTCACAGGCAAGTTCCTCCAGAGCATTACCCCCTCGGAATTGC
TCATGGGCAAGAGCCAGGTTTTCTAGATAACTTTGGTGGCATAGAGAGGTATCCTTACCA
GCGTGGCGCTATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAAT
AACCAGAAGTAGCTTCCCTGCACCTCAGGAGCAGCCTTGGCGTCAAGAGAGATATATTAT
GGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCGAGGAATCTGCA
GGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTT
CCTGGAAAATCGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGC
AGAGTATGGTGGATACGACTGATGGTCTTCAGTGTATGGGTGTATCTTTTATCTGCTTGT
AGAACAGATGAACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATATGGGTATTGAAA
GATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATTTTGTGTGGCAAATTATCGTCTAG
CCACAAAAACATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAG
GCAATAGTTGCTACCTGCAACAAGCCAACAACTATCTTCATATATGCACAGCGTTTCGAG
CGCC