Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0478100-03
CDS Infomation	cds chromosome:IRGSP-1.0:9:18307893:18309308:-1 gene:Os09g0478100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE E1 description:Cellulose synthase family protein. (Os09t0478100-01);Similar to Cellulose synthase-like protein E1. (Os09t0478100-02);Similar to Isoform 2 of Cellulose synthase-like protein E1. (Os09t0478100-03)
Sequence	ATAAAGGAAAGAGGAAAAGAGAACATAAATGAGATTGAGGAGAAGGCAACATCTTTAGTA ACTTGCACTTATGAGCATAGGACACAGTGGGGTAATGACATTGGAGTGAAATACGGTTTC CCGGCAGAGGATATCATTACTGGATTGGCAATACATTGCAGAGGATGGGAGTCAGCCTTC ATAAATCCTAAAAGAGCAGCATTTTTGGGTTTAGCCCCATCAACACTTGCCCAGAATATA CTGCAACATAAGAGATGGAGTGAGGGTAATCTCACAATTTTTCTTTCGAAGTACTGCTCC TTCTTGTTTGGACATGGAAAAATCAAGTTACAACTACAGATGGGCTACTGCATATGTGGA TTATGGGCAGCCAACTCACTGCCTACACTCTATTATGTTGTGATTCCATCACTAGGTCTT GTTAAGGGCACCCCCCTATTCCCACAGATTATGAGTCCATGGGCTACACCCTTCATATAT GTATTTTGTGTGAAGACCCTCTACGGTCTTTATGAGGCATTATTATCTGGGGATACATTG AAAGGATGGTGGAATGGACAAAGGATGTGGATGGTGAAAAGCATTACCTCATATCTATAT GGCTTCATTGACACCATCCGAAAATGTGTAGGAATGTCAAAGATGTCATTTGAAGTTACA GCAAAGGTAAGCGGTCACGATGAAGCAAAGAGGTATGAGCAAGAAATCCTAGAATTTGGG TCATCGTCTCCTGAATATGTGATCATCGCAACCGTCGCATTACTGAACTTCGTCTGCCTA GTTGGAGGGTTAAGTCAAATAATGGCAGGTGTCTGGAATATGCCATGGAATGTGTTTTTA CCCCAGGCCATCCTCTGTGGAATGATAGTAATCATTAATATGCCAATTTATGAGGCAATG TTCCTAAGAAAGGACAATGGGAGAATACCAACAGCAGTCACACTAGCTTCAATTGGCTTT GTAATGTTGGCATTCCTAGTACCAATAGTTTGA

Peptide Sequence

PEP ID	Os09t0478100-03
PEP Infomation	pep chromosome:IRGSP-1.0:9:18307893:18309308:-1 gene:Os09g0478100 transcript:Os09t0478100-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE E1 description:Cellulose synthase family protein. (Os09t0478100-01);Similar to Cellulose synthase-like protein E1. (Os09t0478100-02);Similar to Isoform 2 of Cellulose synthase-like protein E1. (Os09t0478100-03)
Sequence	IKERGKENINEIEEKATSLVTCTYEHRTQWGNDIGVKYGFPAEDIITGLAIHCRGWESAF INPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSKYCSFLFGHGKIKLQLQMGYCICG LWAANSLPTLYYVVIPSLGLVKGTPLFPQIMSPWATPFIYVFCVKTLYGLYEALLSGDTL KGWWNGQRMWMVKSITSYLYGFIDTIRKCVGMSKMSFEVTAKVSGHDEAKRYEQEILEFG SSSPEYVIIATVALLNFVCLVGGLSQIMAGVWNMPWNVFLPQAILCGMIVIINMPIYEAM FLRKDNGRIPTAVTLASIGFVMLAFLVPIV

Transcript Sequence

Transcript ID	Os09t0478100-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:18307893:18309308:-1 gene:Os09g0478100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE E1 description:Cellulose synthase family protein. (Os09t0478100-01);Similar to Cellulose synthase-like protein E1. (Os09t0478100-02);Similar to Isoform 2 of Cellulose synthase-like protein E1. (Os09t0478100-03)
Sequence	GAATAAAGGAAAGAGGAAAAGAGAACATAAATGAGATTGAGGAGAAGGCAACATCTTTAG TAACTTGCACTTATGAGCATAGGACACAGTGGGGTAATGACATTGGAGTGAAATACGGTT TCCCGGCAGAGGATATCATTACTGGATTGGCAATACATTGCAGAGGATGGGAGTCAGCCT TCATAAATCCTAAAAGAGCAGCATTTTTGGGTTTAGCCCCATCAACACTTGCCCAGAATA TACTGCAACATAAGAGATGGAGTGAGGGTAATCTCACAATTTTTCTTTCGAAGTACTGCT CCTTCTTGTTTGGACATGGAAAAATCAAGTTACAACTACAGATGGGCTACTGCATATGTG GATTATGGGCAGCCAACTCACTGCCTACACTCTATTATGTTGTGATTCCATCACTAGGTC TTGTTAAGGGCACCCCCCTATTCCCACAGATTATGAGTCCATGGGCTACACCCTTCATAT ATGTATTTTGTGTGAAGACCCTCTACGGTCTTTATGAGGCATTATTATCTGGGGATACAT TGAAAGGATGGTGGAATGGACAAAGGATGTGGATGGTGAAAAGCATTACCTCATATCTAT ATGGCTTCATTGACACCATCCGAAAATGTGTAGGAATGTCAAAGATGTCATTTGAAGTTA CAGCAAAGGTAAGCGGTCACGATGAAGCAAAGAGGTATGAGCAAGAAATCCTAGAATTTG GGTCATCGTCTCCTGAATATGTGATCATCGCAACCGTCGCATTACTGAACTTCGTCTGCC TAGTTGGAGGGTTAAGTCAAATAATGGCAGGTGTCTGGAATATGCCATGGAATGTGTTTT TACCCCAGGCCATCCTCTGTGGAATGATAGTAATCATTAATATGCCAATTTATGAGGCAA TGTTCCTAAGAAAGGACAATGGGAGAATACCAACAGCAGTCACACTAGCTTCAATTGGCT TTGTAATGTTGGCATTCCTAGTACCAATAGTTTGAGGTCCCTAAAATGGGATTTGATGCC TTATAAAACATTGGGTGTTTCTGATGATGATCATGAAAATAAATTGCATTGCCATTTC