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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0475800-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:18234972:18235872:1 gene:Os09g0475800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DNA BINDING WITH ONE FINGER 25 description:Transcriptional activator, Regulation of the C4 photosynthesis gene, OsC4PPDK (Os09t0475800-01)
Sequence

ATGCAGGAGGCGGGGCGACGGCCGGCGCCGCAGTTCGCGGGCGTGGACCTCCGCCGGCCG
AAGGGGTACCCGGCGGCGGCGCAGCTGACGCCGGCGGCGGAGGAGGCGGCAGCCGGCGTG
GGCGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAGTTCTGCTACTACAACAACTAC
AACACGTCGCAGCCGCGGCACTTCTGCAAGTCGTGCCGCCGCTACTGGACCAAGGGCGGC
TCCCTCCGCAACGTCCCCGTCGGCGGCGGCTCCCGCAAGAGCTCGACTTCCTCCTCCTCC
GCCGCCGCCGCCGCCGCCTCATCGTCGTCGTCGCCTTCTTCGCCAGCCAAGAGCCCCAAG
CGCTCCAAGAACTCCAAGCGCCGCCGCGTCTCTCCGCCCCCTCCTCAGCCCGTGCCTGCG
CCGCCGCCGCCCACCACCGCCGACGCTGCCGACGTAGCCGCACCGACGGCACCAGAAGCC
ACAACCAAGAAAGCCCCGGAAGACCTCACCGCGGCGGCAGCGACACAGCCGGCGGTGGCG
CTCGGGCTCGGCGTCGCCGACGGCGGCGGCGGCGGGAAGGAGCACCTGGACACGAGCCCG
TTCGAGTGGCCGTCGGGCTGCGACCTCGGGCCGTACTGGCCAACCGGCGTGTTCGCCGAC
ACCGATCCATCACTGTTCCTTAACCTGCCATGA

Peptide Sequence

PEP ID

Os09t0475800-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:18234972:18235872:1 gene:Os09g0475800 transcript:Os09t0475800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DNA BINDING WITH ONE FINGER 25 description:Transcriptional activator, Regulation of the C4 photosynthesis gene, OsC4PPDK (Os09t0475800-01)
Sequence

MQEAGRRPAPQFAGVDLRRPKGYPAAAQLTPAAEEAAAGVGDPCPRCESRDTKFCYYNNY
NTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSTSSSSAAAAAASSSSSPSSPAKSPK
RSKNSKRRRVSPPPPQPVPAPPPPTTADAADVAAPTAPEATTKKAPEDLTAAAATQPAVA
LGLGVADGGGGGKEHLDTSPFEWPSGCDLGPYWPTGVFADTDPSLFLNLP

Transcript Sequence

Transcript ID

Os09t0475800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:18234972:18235872:1 gene:Os09g0475800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DNA BINDING WITH ONE FINGER 25 description:Transcriptional activator, Regulation of the C4 photosynthesis gene, OsC4PPDK (Os09t0475800-01)
Sequence

ATGCAGGAGGCGGGGCGACGGCCGGCGCCGCAGTTCGCGGGCGTGGACCTCCGCCGGCCG
AAGGGGTACCCGGCGGCGGCGCAGCTGACGCCGGCGGCGGAGGAGGCGGCAGCCGGCGTG
GGCGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAGTTCTGCTACTACAACAACTAC
AACACGTCGCAGCCGCGGCACTTCTGCAAGTCGTGCCGCCGCTACTGGACCAAGGGCGGC
TCCCTCCGCAACGTCCCCGTCGGCGGCGGCTCCCGCAAGAGCTCGACTTCCTCCTCCTCC
GCCGCCGCCGCCGCCGCCTCATCGTCGTCGTCGCCTTCTTCGCCAGCCAAGAGCCCCAAG
CGCTCCAAGAACTCCAAGCGCCGCCGCGTCTCTCCGCCCCCTCCTCAGCCCGTGCCTGCG
CCGCCGCCGCCCACCACCGCCGACGCTGCCGACGTAGCCGCACCGACGGCACCAGAAGCC
ACAACCAAGAAAGCCCCGGAAGACCTCACCGCGGCGGCAGCGACACAGCCGGCGGTGGCG
CTCGGGCTCGGCGTCGCCGACGGCGGCGGCGGCGGGAAGGAGCACCTGGACACGAGCCCG
TTCGAGTGGCCGTCGGGCTGCGACCTCGGGCCGTACTGGCCAACCGGCGTGTTCGCCGAC
ACCGATCCATCACTGTTCCTTAACCTGCCATGACAAGCCTCTCCCGGACGAACGAGAGGA
TGGTTAGCAAAAAACTTCCAAGTTTTATCGATCAAGTTCTTGATTTCACCTCTGCTCCAT
CTCAGTTTCATCAGATTCTAGTTTATTTTCCAATCCAAATGCTAACTTAGGAGGAAGATG
AACGAACTATGTAATTATTAAATCTGAGCTACAAGATTTATTATCACTTAAGTTTGCAAG
G