Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0474100-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:18141491:18144511:1 gene:Os09g0474100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 085 description:Similar to TA1 protein (Fragment). (Os09t0474100-01)
Sequence	ATGGACATGAGCGAGAGCAGTGAGAAAGGAATGGAGAGCAATGCGTCGTCTGGCCCTGGC AATGGCATCCCGGTGGAGTGGCAGAGCCAATTCAGCAGCGCCTTCGCGTGCCAGCCGTCG GTGGCGGCGCAGCACCAGCAGCACGCCATGATGGACTCCTTCGCGGCGGCGTCCGCCGGC CTGTGGGCGTCCTCCGACGTCGTCAGCGCCATGTCATCGGCCGCGCCGCCGCGGGGCGCG GGGTTCTTGGCGCCGGTGCCCGGGTTCCTCCAGCAGGGGCTCGGCCATTTCCCGGTGGAC TCCGGCTTCATCGAGCGCGCAGCGCGGTCGACGTGCTTCGGCGGCGGGATGATGGCCGGC GGCCCATACGGCGCAGCTGACCAGGCCATGGGCGACGCTTTCGGTGGCACCGCGGAGGGT CTCATGGATCATCACAGGAACGTTGGCAACGACAAGGCCGAGGAGTTCGCCGGCAACGGC CACGACGAGGTGCCGAGCTCGGAGGTAGCCGGTGGAGACTGCTCCTCCAAAGGTTCAGAC TCCAAGAAGAGGAGAAGGCCTAACGAGGTGATGGGAACCGATCAAGTCCATTCTTCCAAC TTGCCATCTGATTCTGCGAACGAGAGTGTTCACAGCAAAGACAAAGGCGAGGAGAGCAGC CCGGCGACGACGAACGGCGGCAAGTCGAAAGGGAAGGGAGCAAAGGAGACCTCTGAGTCA CAGAAAGAAGAGTACATTCATGTCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGC TTAGCAGAAAGGTTGAGAAGGGAGAAGATCAGTGAGAGGATGAAACTTCTTCAGGACCTA GTTCCTGGCTGCAGCAAGGTCACCGGAAAAGCGGTGATGCTTGACGAGATCATCAACTAT GTTCAGTCCCTGCAAAGACAAGTTGAGTTCTTATCGATGAAGCTTGCGACAGTAAACCCA AGGCTTGACCTCAACATAGAAGGGCTTCTTTCAAAAGACCTTCTTCGCTTCCCTGGAGTT CCTTCATCCTCTATCGGATTCTCCCCAGAAATGATGCATCCTCAACTACAATTGTCACAA CCAGGACTGATTCATGGTGGTACCGCTGGCATGGCCAACCCCGATGTGTTCAGACGAATA ATACAAGCGCAATTAGGTGCAAAGGATGGATCTCAGATGCCCCACTCATTGAATGGATCA TTCAGTGACGTTTCCCAAATGGCGTACCCGTCCCTCGGTTCTCAGGACCTAAGCATCAGG CCATCTCAGGATGGGTTTCAAATGTGA

Peptide Sequence

PEP ID	Os09t0474100-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:18141491:18144511:1 gene:Os09g0474100 transcript:Os09t0474100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 085 description:Similar to TA1 protein (Fragment). (Os09t0474100-01)
Sequence	MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAG LWASSDVVSAMSSAAPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFGGGMMAG GPYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSD SKKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSES QKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINY VQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQ PGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIR PSQDGFQM

Transcript Sequence

Transcript ID	Os09t0474100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:18141491:18144511:1 gene:Os09g0474100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 085 description:Similar to TA1 protein (Fragment). (Os09t0474100-01)
Sequence	AGTGGTAGTCTATGATCTTCTACCTCTCTTCTCCCTCTTGCTGGAACATATAGCATCAGA ATCCTCACTGGGCATCTTTCCTTTTCTTGCCATATCTGGCCATAGGCTACAATAAGAGTT CTTGCTTGCTTCTCCTCCTCCTCCTATCGCATTGTTCATACAGCTCTGATCAAGCTCTCT AAGCATCGATCACTTGGTTCTTGCTCATCATCTTTCGCTTGCTCGTCAGCTAGGAATTCG TAGTCTTGAGCCGAGGTTGGGTGATTCGATGGACATGAGCGAGAGCAGTGAGAAAGGAAT GGAGAGCAATGCGTCGTCTGGCCCTGGCAATGGCATCCCGGTGGAGTGGCAGAGCCAATT CAGCAGCGCCTTCGCGTGCCAGCCGTCGGTGGCGGCGCAGCACCAGCAGCACGCCATGAT GGACTCCTTCGCGGCGGCGTCCGCCGGCCTGTGGGCGTCCTCCGACGTCGTCAGCGCCAT GTCATCGGCCGCGCCGCCGCGGGGCGCGGGGTTCTTGGCGCCGGTGCCCGGGTTCCTCCA GCAGGGGCTCGGCCATTTCCCGGTGGACTCCGGCTTCATCGAGCGCGCAGCGCGGTCGAC GTGCTTCGGCGGCGGGATGATGGCCGGCGGCCCATACGGCGCAGCTGACCAGGCCATGGG CGACGCTTTCGGTGGCACCGCGGAGGGTCTCATGGATCATCACAGGAACGTTGGCAACGA CAAGGCCGAGGAGTTCGCCGGCAACGGCCACGACGAGGTGCCGAGCTCGGAGGTAGCCGG TGGAGACTGCTCCTCCAAAGGTTCAGACTCCAAGAAGAGGAGAAGGCCTAACGAGGTGAT GGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCGAACGAGAGTGTTCA CAGCAAAGACAAAGGCGAGGAGAGCAGCCCGGCGACGACGAACGGCGGCAAGTCGAAAGG GAAGGGAGCAAAGGAGACCTCTGAGTCACAGAAAGAAGAGTACATTCATGTCCGGGCTCG GCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGGTTGAGAAGGGAGAAGATCAG TGAGAGGATGAAACTTCTTCAGGACCTAGTTCCTGGCTGCAGCAAGGTCACCGGAAAAGC GGTGATGCTTGACGAGATCATCAACTATGTTCAGTCCCTGCAAAGACAAGTTGAGTTCTT ATCGATGAAGCTTGCGACAGTAAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTTTC AAAAGACCTTCTTCGCTTCCCTGGAGTTCCTTCATCCTCTATCGGATTCTCCCCAGAAAT GATGCATCCTCAACTACAATTGTCACAACCAGGACTGATTCATGGTGGTACCGCTGGCAT GGCCAACCCCGATGTGTTCAGACGAATAATACAAGCGCAATTAGGTGCAAAGGATGGATC TCAGATGCCCCACTCATTGAATGGATCATTCAGTGACGTTTCCCAAATGGCGTACCCGTC CCTCGGTTCTCAGGACCTAAGCATCAGGCCATCTCAGGATGGGTTTCAAATGTGAAGAAG ACGAAGAAGAAGAAGATGATGATGATGAGGGGGCCAATTCCATGTACGTGCAATTGCTTC TGGCATCTGGTGAACAAGGGCAGGCACACGCACATGACTGAAGCTTGCTACTACTGCTGG AGAAGCAGCGTTTGCAGTGCTGCTAGCTCATCGCGTAACTGAAGTCTGAAGGGCTTTTAA TTCCTTCCGTGGCTAGCTGTATATCCATCGAGGTTTTATTGTGTTCAGAACTGAAACTGA AAGGCTTTTGAGCCCCCACGTACAGGGACGCTGGAAACGAAAAATCTGCGTCCTTGATGG CTGGAAATTCTGTCTGGGGAGCGTGCATTTACACTGCAGCACGAGGAGCAGCAGGCAGGC AGCTGAATTTGCTGCAGGGCTGGCACAATGCAAGATCACTCATCCGGTGGCTTTGTTAAG TTACTTCCGATGCATTGTTGGTTGCGAAAACGATTAAACAACTCATCATAAACGTGGCGC TGAATGGTGTTAATGTTAAGATCAAACACATTTGACTCC