Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0471900-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:18018439:18020611:1 gene:Os09g0471900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein. (Os09t0471900-01);Hypothetical conserved gene. (Os09t0471900-02)
Sequence

GTACGGGATAGAGGGTCTTGGTTTGGCACTCACGAAGATGTCCCTCGCTACAGAAAGAAC
GTGATATCACCAAGCATGTTTCCTTCAGGGAAGGGCACCATGGATAGCCATGTGGCTATT
GGCAGTGTTGAGATCAACACAGATGTAATTGATGCTGATATGAAAGATTCAACAAACATG
GTAGAGGGAGAACAAGAAACGAAAACAGCATCTGATGATGTCAATAATGGTGGTGATCCC
AATACTGAAGAGACGAGCAAACTTGAGTCTAATGAAGTTCCAAACGACTCTGATAAAAAG
TCAAATTCTACGTCTATCCGCACAGAACATTCAAATTTCCCTCTGCATCGCTGCATGAGA
ATTGTTCCGCATGATCAAAACAGTGGGGCATTTTTTATTGCAGTCCTTCAGAAAATCTCC
CCTATTAATGGGAACCAAGAGGCAGAACTTATAAAAGGCGAGCACAATATTTCAAAGGAT
AGGGCTGAGAAACTTGAGAAAGGTCTCGGATCAGATAAGGTGCCACATAAAGAAAATACC
GTGCAGCAGCAAGGAGTTGATGATGGTAATGTTATGGATGAACAGCAAAATGGAGATGTG
GATAATGAAACATCAAATGGTAAAAGCTCAGAGGAAGCTAAAGTAATTGTTAATGAGGCA
GAAAATGATCAAGCAGGACCAAGAGATAGGAGGAGGAAGCCACAGAACCAAGGAAGGTGG
AGAGGGGTTGATCCAGTGATATTTTTCAAAGATGAAGCTACAATAAGAAGTATAGTATCT
TTCTATGGTATCAAGGATACATTTCCGCTTGAGGGTCACCTTGTGACTAGGAATCCTGAT
GCTGGCCATGTTAAAAGAATATACTACGTGTCAAAATCAGTGCAAGAAGTTTTGGAGCTC
AATGTAAAAGTTGGTGAGCGGCTTAAGATTACCTCACTTGGCCTAAAGATATTTGAAAGA
CAGTCATCAAAGGATGGCTCACCATGCACATTTAGGTTGTCTTCAGAGGGTTTACCACTG
CTGCTTCCATACATCACCAAACAGATTCTCTACGCTTCTGCAATTGACTTCCAGCACCTT
TTACAATACAGAACTATTAAATTTCCTGATTTTGTGGATGCAAAATTCGGTGAAGAAGCT
TCAGCTTTGTTGCCTGGTTGCTGTGTTGTAGTACTTTGGGAAGGGCATCAGAACATAGAT
TCCATCGCCATGGATCCTTCTGCAATCGCCATTGTTTGCTGGAAAGGGAAGACCAATTTG
TGCGTCATGGTTTCTCCCCTGGATGGGAAGGAGCTGCTTGAGAGGATTTGTTTACGTTAT
GGGCTCAAAATCCCCAAAGCGGATGATGTAAAACCCAGCATGAAGATTGATGGATCAGAC
GAGCAGCCTGATCTCAGCACTGAGGCAGTTGATCCAGAAGCTGTGCCCGAAAGCAAAGCA
TCTGACATGGAGATTGCAGATGCTAAAGAGGTGGAGTAA

Peptide Sequence

PEP ID

Os09t0471900-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:18018439:18020611:1 gene:Os09g0471900 transcript:Os09t0471900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein. (Os09t0471900-01);Hypothetical conserved gene. (Os09t0471900-02)
Sequence

VRDRGSWFGTHEDVPRYRKNVISPSMFPSGKGTMDSHVAIGSVEINTDVIDADMKDSTNM
VEGEQETKTASDDVNNGGDPNTEETSKLESNEVPNDSDKKSNSTSIRTEHSNFPLHRCMR
IVPHDQNSGAFFIAVLQKISPINGNQEAELIKGEHNISKDRAEKLEKGLGSDKVPHKENT
VQQQGVDDGNVMDEQQNGDVDNETSNGKSSEEAKVIVNEAENDQAGPRDRRRKPQNQGRW
RGVDPVIFFKDEATIRSIVSFYGIKDTFPLEGHLVTRNPDAGHVKRIYYVSKSVQEVLEL
NVKVGERLKITSLGLKIFERQSSKDGSPCTFRLSSEGLPLLLPYITKQILYASAIDFQHL
LQYRTIKFPDFVDAKFGEEASALLPGCCVVVLWEGHQNIDSIAMDPSAIAIVCWKGKTNL
CVMVSPLDGKELLERICLRYGLKIPKADDVKPSMKIDGSDEQPDLSTEAVDPEAVPESKA
SDMEIADAKEVE

Transcript Sequence

Transcript ID

Os09t0471900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:18018439:18020611:1 gene:Os09g0471900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein. (Os09t0471900-01);Hypothetical conserved gene. (Os09t0471900-02)
Sequence

AGGTACGGGATAGAGGGTCTTGGTTTGGCACTCACGAAGATGTCCCTCGCTACAGAAAGA
ACGTGATATCACCAAGCATGTTTCCTTCAGGGAAGGGCACCATGGATAGCCATGTGGCTA
TTGGCAGTGTTGAGATCAACACAGATGTAATTGATGCTGATATGAAAGATTCAACAAACA
TGGTAGAGGGAGAACAAGAAACGAAAACAGCATCTGATGATGTCAATAATGGTGGTGATC
CCAATACTGAAGAGACGAGCAAACTTGAGTCTAATGAAGTTCCAAACGACTCTGATAAAA
AGTCAAATTCTACGTCTATCCGCACAGAACATTCAAATTTCCCTCTGCATCGCTGCATGA
GAATTGTTCCGCATGATCAAAACAGTGGGGCATTTTTTATTGCAGTCCTTCAGAAAATCT
CCCCTATTAATGGGAACCAAGAGGCAGAACTTATAAAAGGCGAGCACAATATTTCAAAGG
ATAGGGCTGAGAAACTTGAGAAAGGTCTCGGATCAGATAAGGTGCCACATAAAGAAAATA
CCGTGCAGCAGCAAGGAGTTGATGATGGTAATGTTATGGATGAACAGCAAAATGGAGATG
TGGATAATGAAACATCAAATGGTAAAAGCTCAGAGGAAGCTAAAGTAATTGTTAATGAGG
CAGAAAATGATCAAGCAGGACCAAGAGATAGGAGGAGGAAGCCACAGAACCAAGGAAGGT
GGAGAGGGGTTGATCCAGTGATATTTTTCAAAGATGAAGCTACAATAAGAAGTATAGTAT
CTTTCTATGGTATCAAGGATACATTTCCGCTTGAGGGTCACCTTGTGACTAGGAATCCTG
ATGCTGGCCATGTTAAAAGAATATACTACGTGTCAAAATCAGTGCAAGAAGTTTTGGAGC
TCAATGTAAAAGTTGGTGAGCGGCTTAAGATTACCTCACTTGGCCTAAAGATATTTGAAA
GACAGTCATCAAAGGATGGCTCACCATGCACATTTAGGTTGTCTTCAGAGGGTTTACCAC
TGCTGCTTCCATACATCACCAAACAGATTCTCTACGCTTCTGCAATTGACTTCCAGCACC
TTTTACAATACAGAACTATTAAATTTCCTGATTTTGTGGATGCAAAATTCGGTGAAGAAG
CTTCAGCTTTGTTGCCTGGTTGCTGTGTTGTAGTACTTTGGGAAGGGCATCAGAACATAG
ATTCCATCGCCATGGATCCTTCTGCAATCGCCATTGTTTGCTGGAAAGGGAAGACCAATT
TGTGCGTCATGGTTTCTCCCCTGGATGGGAAGGAGCTGCTTGAGAGGATTTGTTTACGTT
ATGGGCTCAAAATCCCCAAAGCGGATGATGTAAAACCCAGCATGAAGATTGATGGATCAG
ACGAGCAGCCTGATCTCAGCACTGAGGCAGTTGATCCAGAAGCTGTGCCCGAAAGCAAAG
CATCTGACATGGAGATTGCAGATGCTAAAGAGGTGGAGTAATCCTGCTGAATGCTGATGC
TATCCAAGGCCACATATTATAGCTGGATACAACATCGCCCCATCATTTGCCTACCGGTAT
TAGTTGAGCGATGAGCCGCCATTTTTCATTGATTCTGGCATTTACGCCGTTTTCCTGTTT
GATTTATCATATTCTGTTTCTGAAGAATGGGTGAATGAACTCGCCCATTAGTGAAAGGGC
ACCACGTTGCTCTAAAGCCCATCTGTCCATGTCATCTGGTAATCGTGCACGTATTGCCCC
CTCCATACTTCCGGCTGGCTCATCCACCTGTAACCTATCAGTATCAGCTTATTTTTCTTC
GAAGAGAATGTATTACAGGGAGTCTTAACCTGAACTCTTGAACCTGATAAATTTTGATAT
GACAATATTTCAGAC