Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0468700-00
CDS Infomation

cds chromosome:IRGSP-1.0:9:17826692:17828508:1 gene:Os09g0468700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 046 description:Helix-loop-helix DNA-binding domain containing protein. (Os09t0468700-00)
Sequence

ATGGCACTGGAGGCCGTGCTGCTCTCGCGTGGTGATCTGTTTGGTCGTCGTCGTTGCGCC
ATGGAAGGAGGAGGAGGTGGTTGGAGCAGCCCGTTCAGTGGCTTCGAGGGAGTGATGGAT
TTGGACGGCGGCAACTGGGACGCCGCCGCGTGCTCATCGATGCTTCTGCATGGCTTCCAG
GAGCTAGAGATCCCTGCGGCCGCCGCTGCTGCTGCTGCCATGGCGCCGCCGCCGCCGCCG
GTAGAGCCTGCTAATTGCGCGGAGAATGCAGGAGGGGTTGGTGGTCATCAGGAGGATCAG
GCTGCGGTGGCGGCAGCGGCGACGGCGGTGCAGTCGGGGAGGAGGAAGCGGCGGCGGGCG
AGGGCGGCGAAGAACAAGGAGGAGGTGGAGAGCCAGCGGATGACCCACATTGCCGTCGAG
CGCAACCGCCGGAAGCAGATGAACGAGTACCTCGCCGTGCTCCGCTCCCTCATGCCGCCG
TCCTACGCGCAAAGGGGTGATCAGGCGTCCATCGTCGGCGGCGCAATCAACTTCGTCAAG
GAGCTGGAGCAGCTGCTCCAGTCGCTGGAGGCGCGGAAGAGTTCCCGGCAATGCGCGGCC
CACGACGCGGCGGCAGCGGCGGCGCCGTTCGCCAGCTTCTTCACCTTCCCGCAGTACTCG
ATGAGCGCCGCCGCCGCCGCGGCGCCGGTGGCTCCCGTTGTGAACGAGTTGCACGGCCGT
GACGACGGCGGAGCAGGCACCGCCGAGGCCGAGGCGTCAGGGTCGAAGCCGTCGGCGGTG
GCCGACGTCGAGGTGACCATGGTGGAGAGCCACGCCAACCTGCGGGTGCTGTCACGGCGG
CGGCCGAGGCAGCTGCTCCGGCTGGTGGTGGCGCTGCAGGGCCACCGGCTCACCGTGCTC
CACCTCAACATGACCAGCGCCGGCCACATGGTTCTCTACTCGTTCAGCCTCAAGGTGGAG
GATGATTGCCAGCTTACGTCTGTGGATGAGATTGCAACCGCCGCTCATCAGATCATTGAG
AAGATTCAAGAAGAGCAGGGCTGTAGTTTAGATTAG

Peptide Sequence

PEP ID

Os09t0468700-00
PEP Infomation

pep chromosome:IRGSP-1.0:9:17826692:17828508:1 gene:Os09g0468700 transcript:Os09t0468700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 046 description:Helix-loop-helix DNA-binding domain containing protein. (Os09t0468700-00)
Sequence

MALEAVLLSRGDLFGRRRCAMEGGGGGWSSPFSGFEGVMDLDGGNWDAAACSSMLLHGFQ
ELEIPAAAAAAAAMAPPPPPVEPANCAENAGGVGGHQEDQAAVAAAATAVQSGRRKRRRA
RAAKNKEEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINFVK
ELEQLLQSLEARKSSRQCAAHDAAAAAAPFASFFTFPQYSMSAAAAAAPVAPVVNELHGR
DDGGAGTAEAEASGSKPSAVADVEVTMVESHANLRVLSRRRPRQLLRLVVALQGHRLTVL
HLNMTSAGHMVLYSFSLKVEDDCQLTSVDEIATAAHQIIEKIQEEQGCSLD

Transcript Sequence

Transcript ID

Os09t0468700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:17826692:17828508:1 gene:Os09g0468700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 046 description:Helix-loop-helix DNA-binding domain containing protein. (Os09t0468700-00)
Sequence

GGTGTCTCGTTGAGAGGTGAGATCCTGCGGAGGCATGGCACTGGAGGCCGTGCTGCTCTC
GCGTGGTGATCTGTTTGGTCGTCGTCGTTGCGCCATGGAAGGAGGAGGAGGTGGTTGGAG
CAGCCCGTTCAGTGGCTTCGAGGGAGTGATGGATTTGGACGGCGGCAACTGGGACGCCGC
CGCGTGCTCATCGATGCTTCTGCATGGCTTCCAGGAGCTAGAGATCCCTGCGGCCGCCGC
TGCTGCTGCTGCCATGGCGCCGCCGCCGCCGCCGGTAGAGCCTGCTAATTGCGCGGAGAA
TGCAGGAGGGGTTGGTGGTCATCAGGAGGATCAGGCTGCGGTGGCGGCAGCGGCGACGGC
GGTGCAGTCGGGGAGGAGGAAGCGGCGGCGGGCGAGGGCGGCGAAGAACAAGGAGGAGGT
GGAGAGCCAGCGGATGACCCACATTGCCGTCGAGCGCAACCGCCGGAAGCAGATGAACGA
GTACCTCGCCGTGCTCCGCTCCCTCATGCCGCCGTCCTACGCGCAAAGGGGTGATCAGGC
GTCCATCGTCGGCGGCGCAATCAACTTCGTCAAGGAGCTGGAGCAGCTGCTCCAGTCGCT
GGAGGCGCGGAAGAGTTCCCGGCAATGCGCGGCCCACGACGCGGCGGCAGCGGCGGCGCC
GTTCGCCAGCTTCTTCACCTTCCCGCAGTACTCGATGAGCGCCGCCGCCGCCGCGGCGCC
GGTGGCTCCCGTTGTGAACGAGTTGCACGGCCGTGACGACGGCGGAGCAGGCACCGCCGA
GGCCGAGGCGTCAGGGTCGAAGCCGTCGGCGGTGGCCGACGTCGAGGTGACCATGGTGGA
GAGCCACGCCAACCTGCGGGTGCTGTCACGGCGGCGGCCGAGGCAGCTGCTCCGGCTGGT
GGTGGCGCTGCAGGGCCACCGGCTCACCGTGCTCCACCTCAACATGACCAGCGCCGGCCA
CATGGTTCTCTACTCGTTCAGCCTCAAGGTGGAGGATGATTGCCAGCTTACGTCTGTGGA
TGAGATTGCAACCGCCGCTCATCAGATCATTGAGAAGATTCAAGAAGAGCAGGGCTGTAG
TTTAGATTAGCAATTAGCATACCAACCAACTACGTTTACTAGCATGTATGAATGATGATG
ATTAGTTGTTCTAGCAAGTGAAGCCACTTCCTTGTGCAAACTAATATTATTGTGCCTTTA
TGTACTTAGCAGTTTCATTAATCATTAGTGTTGAATCATTTCATAATAATGGACTGATTT
GTTCATATGTGGAGTGTGCAAGTGAAACGCATGCATG