Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0466300-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:17694162:17695486:1 gene:Os09g0466300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to FIP1. (Os09t0466300-01)
Sequence

CAGATACGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGCGCGGCCCG
CTCGATCCGCTGATTCACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGGAGGCCAACCCC
TACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGCGGTGGGCG
CGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTGTCGCGCAACACATGGCAGCAC
CTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTGGGGAGGATCGCGCAGGGGACCAAG
GTCCTGGCCGAGGGCGGCCACGACAGGATATTCCGGCAGGCGTTCAGCGCGCCGCCCGAC
GAGCAGCTCCGCAAGTCCTACGCGTGCTACCTCTCCACCTCCGCCGGCCCGGTGATGGGC
ATCCTGTACCTCTCCACGGCCAGGGTCGCCTTCTGCAGCGACAGCCCACTCTCCTACGAG
GCCGGCGGCGGCAGCAAAGAGTGGAGCTACTACAAGGTGGCGATTCCTCTGCACAGGCTG
AGGTCGGCGAGCCCGTCGGCCAGCAAGCAGAGGCCCGCGGAGAAGTTCATCCAGCTCGTG
TCGGTGGACCGCCATGAGTTCTGGTTGATGGGCTTTGTGAACTACGACAGCGCGGTCAAG
CACTTGCAGGAGGCTCTCAGCGGCTTCCACCACCTGCAAGCGTGA

Peptide Sequence

PEP ID

Os09t0466300-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:17694162:17695486:1 gene:Os09g0466300 transcript:Os09t0466300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to FIP1. (Os09t0466300-01)
Sequence

QIRREHSNLLPHGSTKRRGPLDPLIHQRRSGRRVATEANPYAMPSSSRTETVKNALSRWA
RRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAPPD
EQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSYYKVAIPLHRL
RSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALSGFHHLQA

Transcript Sequence

Transcript ID

Os09t0466300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:17694162:17695486:1 gene:Os09g0466300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to FIP1. (Os09t0466300-01)
Sequence

GGCAGATACGAAGGGAACATTCCAACCTCCTCCCACACGGCTCCACCAAGAGGCGCGGCC
CGCTCGATCCGCTGATTCACCAGCGTCGGTCTGGTCGCCGAGTGGCAACGGAGGCCAACC
CCTACGCGATGCCGTCGTCGAGCAGGACGGAGACGGTGAAGAACGCGCTGTCGCGGTGGG
CGCGGAGAGTCGGCGAGACGACCAGGAAGGCCGAGGACCTGTCGCGCAACACATGGCAGC
ACCTGAGGACGGCGCCGAGCATCGGGGAGGCGGCCGTGGGGAGGATCGCGCAGGGGACCA
AGGTCCTGGCCGAGGGCGGCCACGACAGGATATTCCGGCAGGCGTTCAGCGCGCCGCCCG
ACGAGCAGCTCCGCAAGTCCTACGCGTGCTACCTCTCCACCTCCGCCGGCCCGGTGATGG
GCATCCTGTACCTCTCCACGGCCAGGGTCGCCTTCTGCAGCGACAGCCCACTCTCCTACG
AGGCCGGCGGCGGCAGCAAAGAGTGGAGCTACTACAAGGTGGCGATTCCTCTGCACAGGC
TGAGGTCGGCGAGCCCGTCGGCCAGCAAGCAGAGGCCCGCGGAGAAGTTCATCCAGCTCG
TGTCGGTGGACCGCCATGAGTTCTGGTTGATGGGCTTTGTGAACTACGACAGCGCGGTCA
AGCACTTGCAGGAGGCTCTCAGCGGCTTCCACCACCTGCAAGCGTGAGTGCGTGACAGGC
GGCATCGGCATTTGCCCGCGCTAATCTTCGTTGTTCGCTGATTGACACGGCGTGATTTGT
GTCTTGGGGTGTTTGTGCTCTAGTTCTTCTTGCTGAGGATATGTTTATGAGTGCATCGGT
CACTTGAGATTGTTTGGGATTGCGGATATCTTCGATTGTTTGGAGATACATGTCACACAT
CTAAGATTCCTGAAGCTCTTCACTTAAAATCTTATAGGTTTTGGAAACTGTGGTTGCCTT
ATTTTTTTTTTTTGAGAGAATAGCCAACATGATCCTTGAAGTTTTGCTCCATGATC