Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0457400-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:17288993:17291252:1 gene:Os09g0457400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-AMYLASE 3A description:Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase). (Os09t0457400-01)
Sequence	ATGGGGAAGCAAATGGCCGCCCTGTGTGGCTTTCTCCTCGTGGCGTTGCTCTGGCTCACG CCCGACGTCGCGCACGCGCAGACGCAGATCCTCTTCCAGGGTTTTAACTGGGACTCGTGG AAGAAGCAGGGTGGTTGGTACAACATGCTCAAGGACCAGGTGGGCGACATCGCCAGCGCC GGCGTCACGCACGTCTGGCTCCCACCTCCCACGCACTCCGTCTCGCCTCAAGGCTACATG CCGGGACGGCTCTACGACCTGAACGCGTCCAAGTACGGCACCAAGGCGGAGCTCAAGTCG CTCATCGCCGCCTTCCACGCCAAGGGCATCAAGTGCGTCGCGGACATCGTCGTCAACCAC CGCTGCGCCGACGACAAGGACGGCCGCGGCGTCTACTGCATCTTCAAGGGCGGCGGCCCG CGCGGCTGCCTGGACTGGGGCCCCTCCATGATCTGCTGCGACGACACGCAGTACTCCGAC GGCACGGGCCACCGCGACACCGGCGCCGACTTCGCCGCGGCGCCCGATATCGACCACCTC AACCCGCTCGTCCAGCGGGAGCTCTCCGACTGGCTCAGGTGGCTCAGGAGGGATGTCGGC TTCGACGGCTGGCGCCTCGACTTCGCCAAGGGCTACTCGGCGGCCGTCGCCAGGACGTAT GTCCAGAACGCCAGGCCGAGCTTCGTCGTGGCGGAGATATGGAACTCCCTGAGCTACGAC GGCGACGGGAAGCCGGCGGCCAACCAGGACGGCCAGCGGCAGGAGCTCGTGAACTGGGTG AAGCAGGTTGGCGGCCCGGCGACGGCGTTCGACTTCACGACCAAGGGCATCCTGCAGTCG GCGGTGCAGGGCGAGCTGTGGCGGATGCGGGACAAGGACGGCAAGGCGCCGGGCATGATA GGCTGGTATCCCGAGAAGGCCGTCACCTTCGTCGACAACCACGACACCGGCTCGACGCAG CGGATGTGGCCATTCCCGTCTGACAAGGTCATTCTGGGCTACGCCTACATCCTCACCCAC CCAGGAGTACCATGCATCTTCTACGACCACGTGTTCGACTGGAACCTCAAGCAAGAGATC AACGCGCTGGCGGCGACGAGGAAGCGCAACGGGATAAACGCCGGGAGCAAGCTGCGCGTC CTGGCGGCGGAGAGCGACATGTACGTGGCGATGGTCGACGAGAGGGTCATCACCAAGATC GGGCCGAGAATAGACGTGGGCAACATAATCCCGTCGGACTTCCACATCGTGGCTCATGGC AATGACTACTGCGTCTGGGAGAAGAGCGGCCTTAGAGTCCCAGAACCAGAAGGTCGGCGC TAG

Peptide Sequence

PEP ID	Os09t0457400-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:17288993:17291252:1 gene:Os09g0457400 transcript:Os09t0457400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-AMYLASE 3A description:Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase). (Os09t0457400-01)
Sequence	MGKQMAALCGFLLVALLWLTPDVAHAQTQILFQGFNWDSWKKQGGWYNMLKDQVGDIASA GVTHVWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNH RCADDKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSDGTGHRDTGADFAAAPDIDHL NPLVQRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNARPSFVVAEIWNSLSYD GDGKPAANQDGQRQELVNWVKQVGGPATAFDFTTKGILQSAVQGELWRMRDKDGKAPGMI GWYPEKAVTFVDNHDTGSTQRMWPFPSDKVILGYAYILTHPGVPCIFYDHVFDWNLKQEI NALAATRKRNGINAGSKLRVLAAESDMYVAMVDERVITKIGPRIDVGNIIPSDFHIVAHG NDYCVWEKSGLRVPEPEGRR

Transcript Sequence

Transcript ID	Os09t0457400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:17288993:17291252:1 gene:Os09g0457400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-AMYLASE 3A description:Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase). (Os09t0457400-01)
Sequence	ACGCAGCAAGAGCCGATCGATCATTGTCCAAGTCTCCAAGCGATCAGCTAGCTGACTTGA CGACGCTGCGAGCAGCGGCAGCAAGAGAGCAGCAGCACAAAGGGTTCCCCTTTCACAAGT GTCCGGCCGGCTGCACGTAGGCCATGGGGAAGCAAATGGCCGCCCTGTGTGGCTTTCTCC TCGTGGCGTTGCTCTGGCTCACGCCCGACGTCGCGCACGCGCAGACGCAGATCCTCTTCC AGGGTTTTAACTGGGACTCGTGGAAGAAGCAGGGTGGTTGGTACAACATGCTCAAGGACC AGGTGGGCGACATCGCCAGCGCCGGCGTCACGCACGTCTGGCTCCCACCTCCCACGCACT CCGTCTCGCCTCAAGGCTACATGCCGGGACGGCTCTACGACCTGAACGCGTCCAAGTACG GCACCAAGGCGGAGCTCAAGTCGCTCATCGCCGCCTTCCACGCCAAGGGCATCAAGTGCG TCGCGGACATCGTCGTCAACCACCGCTGCGCCGACGACAAGGACGGCCGCGGCGTCTACT GCATCTTCAAGGGCGGCGGCCCGCGCGGCTGCCTGGACTGGGGCCCCTCCATGATCTGCT GCGACGACACGCAGTACTCCGACGGCACGGGCCACCGCGACACCGGCGCCGACTTCGCCG CGGCGCCCGATATCGACCACCTCAACCCGCTCGTCCAGCGGGAGCTCTCCGACTGGCTCA GGTGGCTCAGGAGGGATGTCGGCTTCGACGGCTGGCGCCTCGACTTCGCCAAGGGCTACT CGGCGGCCGTCGCCAGGACGTATGTCCAGAACGCCAGGCCGAGCTTCGTCGTGGCGGAGA TATGGAACTCCCTGAGCTACGACGGCGACGGGAAGCCGGCGGCCAACCAGGACGGCCAGC GGCAGGAGCTCGTGAACTGGGTGAAGCAGGTTGGCGGCCCGGCGACGGCGTTCGACTTCA CGACCAAGGGCATCCTGCAGTCGGCGGTGCAGGGCGAGCTGTGGCGGATGCGGGACAAGG ACGGCAAGGCGCCGGGCATGATAGGCTGGTATCCCGAGAAGGCCGTCACCTTCGTCGACA ACCACGACACCGGCTCGACGCAGCGGATGTGGCCATTCCCGTCTGACAAGGTCATTCTGG GCTACGCCTACATCCTCACCCACCCAGGAGTACCATGCATCTTCTACGACCACGTGTTCG ACTGGAACCTCAAGCAAGAGATCAACGCGCTGGCGGCGACGAGGAAGCGCAACGGGATAA ACGCCGGGAGCAAGCTGCGCGTCCTGGCGGCGGAGAGCGACATGTACGTGGCGATGGTCG ACGAGAGGGTCATCACCAAGATCGGGCCGAGAATAGACGTGGGCAACATAATCCCGTCGG ACTTCCACATCGTGGCTCATGGCAATGACTACTGCGTCTGGGAGAAGAGCGGCCTTAGAG TCCCAGAACCAGAAGGTCGGCGCTAGAAACGGCTCGCAAGCTAGCTACACAGTTCTTAAT AACTTGGTCGCAAAAAAAAAGTTCTTAATAATTTGTACGAGAAATGTTCGTTTCTGTTTG CATATATAGCTTATGAAATCTTACCAATATATACTGCTCTGTTTTCTATAGTTCATCCCG GAAATTTGAACTTGC