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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0454100-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:17059864:17062344:1 gene:Os09g0454100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 15, RHOMBOID 15 description:Peptidase S54, rhomboid domain containing protein. (Os09t0454100-01)
Sequence

ATGGCGTCGTCGTCGCCGCCGTGGCTGCTGCTCCCCTCCTTCCCCTGGCCTCCCCCGCCC
CCTCCCGGCTCCTCCTCCGGCCGCGGCGGCGGAGGAGGCGGCGGCGGGGACCCCGGCGAC
TGGAAGCCGAACGTCGTCGCGGCGTTCGCCGGCGCCCAACTCGGCCGCGCCCTCCGCCGT
CGCCTCGCCGGCCTCCTCCGCTCGCCGGAGGCGCGACATCTTGGTGCCTTGCCGAGAATA
GGTGACATTTGGTTTGAAGGATCAGACTCATTCGCCACACACTCGATTCTTGGAGTGTTG
GAGAATGCGCTCTCCGCACCATATGCTTGCAGCTCTGTTTTGTTCAATGGAAATGGATCG
GACAGGAGGTACATCGGTAGGGGGAAGTTGCCATCCAGAAGGCCAAGTGGAATCAATTCG
AAGAAGAGGCTTTGGACTAATATTCTTCTTGCTGTTAATATTCTGGCTTATGTCGCTCAG
ATAACTACACAAGGACGATTACTTATATGGGGGGCTAAGATCAACAGTATGATTGATAGA
GGAGAACTCTGGCGTCTGGCTACATCATCTCTTCTTCATGCAAATCTTGCTCATCTTGCT
TTCAACTGTTTTTCTTTAAATTCAATTGGACCTATGGTGGAAATGCTTACTGGTCCTAGA
AGATATCTTGCCGTGTATTTCACTTCGGCTCTGGCAGGTTCATTAATGAGTTATCGCTAT
TGTGCGTCTCCTGCGGTTGGTGCGTCAGGGGCCATTTTTGGATTGGTTGGTGCCTATGCT
GTTTATACGTGGAGGCATAGGAGATTTTTGGGGCATGGAAAGGAAAGTTTAGAGCATATT
GGACGCGTTGTTATCTTGAATATGGGTATGGGTCTCCTTACAAGGGGCATTGATAACTGG
GGCCATTTGGGAGGCTTGCTCGGAGGCATGGCTATGGCATGGTTCCTCGGTCCAGCTTGG
CAATATCAATATGTGTCAAAGGACGGAAGAGCGGTGTTCAAAGACAATGCCCCTATTCTC
CAACTAAGCAACGGGAAATGGTTGAGGTAG

Peptide Sequence

PEP ID

Os09t0454100-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:17059864:17062344:1 gene:Os09g0454100 transcript:Os09t0454100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 15, RHOMBOID 15 description:Peptidase S54, rhomboid domain containing protein. (Os09t0454100-01)
Sequence

MASSSPPWLLLPSFPWPPPPPPGSSSGRGGGGGGGGDPGDWKPNVVAAFAGAQLGRALRR
RLAGLLRSPEARHLGALPRIGDIWFEGSDSFATHSILGVLENALSAPYACSSVLFNGNGS
DRRYIGRGKLPSRRPSGINSKKRLWTNILLAVNILAYVAQITTQGRLLIWGAKINSMIDR
GELWRLATSSLLHANLAHLAFNCFSLNSIGPMVEMLTGPRRYLAVYFTSALAGSLMSYRY
CASPAVGASGAIFGLVGAYAVYTWRHRRFLGHGKESLEHIGRVVILNMGMGLLTRGIDNW
GHLGGLLGGMAMAWFLGPAWQYQYVSKDGRAVFKDNAPILQLSNGKWLR

Transcript Sequence

Transcript ID

Os09t0454100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:17059864:17062344:1 gene:Os09g0454100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 15, RHOMBOID 15 description:Peptidase S54, rhomboid domain containing protein. (Os09t0454100-01)
Sequence

TCGCAGGCGGTGGGGCCCATGGCGTCGTCGTCGCCGCCGTGGCTGCTGCTCCCCTCCTTC
CCCTGGCCTCCCCCGCCCCCTCCCGGCTCCTCCTCCGGCCGCGGCGGCGGAGGAGGCGGC
GGCGGGGACCCCGGCGACTGGAAGCCGAACGTCGTCGCGGCGTTCGCCGGCGCCCAACTC
GGCCGCGCCCTCCGCCGTCGCCTCGCCGGCCTCCTCCGCTCGCCGGAGGCGCGACATCTT
GGTGCCTTGCCGAGAATAGGTGACATTTGGTTTGAAGGATCAGACTCATTCGCCACACAC
TCGATTCTTGGAGTGTTGGAGAATGCGCTCTCCGCACCATATGCTTGCAGCTCTGTTTTG
TTCAATGGAAATGGATCGGACAGGAGGTACATCGGTAGGGGGAAGTTGCCATCCAGAAGG
CCAAGTGGAATCAATTCGAAGAAGAGGCTTTGGACTAATATTCTTCTTGCTGTTAATATT
CTGGCTTATGTCGCTCAGATAACTACACAAGGACGATTACTTATATGGGGGGCTAAGATC
AACAGTATGATTGATAGAGGAGAACTCTGGCGTCTGGCTACATCATCTCTTCTTCATGCA
AATCTTGCTCATCTTGCTTTCAACTGTTTTTCTTTAAATTCAATTGGACCTATGGTGGAA
ATGCTTACTGGTCCTAGAAGATATCTTGCCGTGTATTTCACTTCGGCTCTGGCAGGTTCA
TTAATGAGTTATCGCTATTGTGCGTCTCCTGCGGTTGGTGCGTCAGGGGCCATTTTTGGA
TTGGTTGGTGCCTATGCTGTTTATACGTGGAGGCATAGGAGATTTTTGGGGCATGGAAAG
GAAAGTTTAGAGCATATTGGACGCGTTGTTATCTTGAATATGGGTATGGGTCTCCTTACA
AGGGGCATTGATAACTGGGGCCATTTGGGAGGCTTGCTCGGAGGCATGGCTATGGCATGG
TTCCTCGGTCCAGCTTGGCAATATCAATATGTGTCAAAGGACGGAAGAGCGGTGTTCAAA
GACAATGCCCCTATTCTCCAACTAAGCAACGGGAAATGGTTGAGGTAGAATTTTGTATTT
AAAACGGATTCCTAACTTGTGTGGGACACAGAAATTGAAGACTGAAGAGAGGTGGGGTTT
GACACTGCCATTCTGCCAAGGTGATGGAGTGGACGCCTAGTTTGGACTTTGGAAAGCTAT
TTCCAGGGAAACTCCAGCTCCAAATCTTACGCAAGGGCGACATTTGAGTTCACCTGAGTC
ATTATTTTTGGATATAAGTTGCAATTGTCTACTGTGACAGATTATAGCTAATCAATACTC
AAATAGTCACCACAGCAATTGTATTTAACATGCTTATCAGTGTTACTGGAGCCCAACTGG
CACGGTGTACATGAATCCATATTTGATACAGCTAACTATAGGCTCAAGTGTATCAATCTA
TTTATTTTTGGGGTG