Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0444200-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:16543048:16549779:-1 gene:Os09g0444200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lecithin:cholesterol acyltransferase family protein. (Os09t0444200-01);Similar to predicted protein. (Os09t0444200-02)
Sequence	ATGTCGCTGCTGCGGCGCCGGAAGCAGCCGCAGCCGCCGCCGGAGCAGCCGAACGAGGAC AGCAGCAACGGCTCCGACCTCGACGAGAAGGGGAAGAAGAAGCCGGGATCGTCGTCCTCC TCGGCGGCGCCTCCTCCGGAGGCGGCGGCGGCGGCGGCGAAGGAGGCGACGAAGCGGACG AGGGCCAGGTGGTCGTGCGTGGACAGCTGCTGCTGGCTGGTGGGGTGCGTGTGCTCGGCG TGGTGGCTGCTGCTCTTCCTGTACAACGCGATGCCGGCGTCGTTCCCGCAGTACGTCACG GAGGCGATCACGGGGCCGCTCCCGGACCCTCCCGGGGTCAAGCTGCAGAAGGAGGGGCTG CGGGCGAAGCACCCCGTCGTGTTCGTCCCGGGCATCGTCACCGGCGGCCTCGAGCTCTGG GAGGGGCACCAGTGCGCCGAGGGGCTCTTCCGCAAGCGCCTCTGGGGCGGCACGTTCGGC GACGTGTACAAGAGGCCTTTATGCTGGGTTGAACATATGTCACTGGACAATGAAACTGGA TTAGATAAACCAGGAATAAGAGTTCGGCCAGTCACAGGCCTAGTGGCAGCAGACTATTTT GTTCCTGGGTATTTTGTTTGGGCTGTTTTGATTGCAAATTTAGCTCGTATTGGATATGAA GAAAAGACCATGTACATGGCTGCATATGATTGGAGGTTATCTTTCCAGAACACTGAGGTT CGTGATCAAACTTTGAGCAGGATAAAAAGTAACATTGAACTCCTGGTAGCAACTAATGGT GGAAATAGGGTGGTGGTGATCCCACATTCTATGGGGGTTCTCTATTTTCTGCATTTTATG AAGTGGGTTGAGGCTCCTCCTCCCATGGGTGGTGGTGGTGGTCCAAATTGGTGTGCAAAG CACATCAAATCTGTAATGAATATTGGCGGACCTTTCTTAGGAGTTCCTAAGGCTGTTGCA GGACTTTTCTCATCTGAAGCCAAAGATGTTGCTGTTGCTAGAGCCATTGCACCAGAAGTC CTAGACTCTGACTTCCTTGGACTTCAGACCTTACGCCATTTGATGCGTATGACCCGCACA TGGGATTCAACAATGTCAATGATTCCTAAGGGCGGTGACACCATTTGGGGAGATTTGGAT TGGTCTCCAGAAGATGGTTTTGAGTGTAAAGCTAAGAATCAGAAAATCAATGATTCTGAG GTTTCTAAGGATGCTAACGGGAAGAATGAGGTTCATCCAGAACCTGTTAAGTATGGAAGA ATTGTCTCTTTCGGTAAAGATGTAGCAGAGGCTCCATCTTCAGAAATTGAGCAGATAGAA TTTCGTGATGCTGTCAAAGGCAATAATATTGCCCACTCAAATACATCATGCCGGGATATA TGGACAGAGTATCATGAATTAGGATGGGGCGGAATAAAGGCAGTTGCAGACTACAAGGTT TACACTGCTGGCTCCATTATAGATCTTCTTCGTTTTGTTGCTCCAAGGATGATGCAGCGT GGAAGTGTTCACTTTTCGTATGGGATTGCTGACAACTTGGATGATCCAAAGTACGGCCAC TACAAATACTGGTCAAATCCCTTGGAAACAAAATTACCAAATGCACCTGAAATGGAAATA TTTTCAATGTATGGAGTTGGCATTCCGACGGAGAGAGCATATGTCTATAAATTAGCCCCA CAAGCAGAGTGCTATATACCTTTTCAGATAGACGCTTCAGCTGAGGGTGGGGATGAGAAT AGCTGTCTGAAAGGCGGCGTTTACCTGTCTAATGGTGATGAGACCGTACCAGTTCTTAGT GCAGGATATATGTGCGCAAAAGGCTGGCGAGGAAAAACACGCTTCAACCCTTCTGGCAGC AAGACCTACGTCAGAGAATACAGCCATTCTCCACCCTCAAATCTCCTCGAAGGCAGGGGC ACCCAGAGTGGTGCGCACGTTGATATCATGGGGAATTTTGCTTTAATCGAGGATATTATC AGGATTGCTGCTGGGGCAACTGGTGAAGAGCTTGGCGGTGACCAGGTTTATTCCGATATA TTCAAATGGTCTGATAAGATTAAATTGAAACTATAA

Peptide Sequence

PEP ID	Os09t0444200-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:16543048:16549779:-1 gene:Os09g0444200 transcript:Os09t0444200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lecithin:cholesterol acyltransferase family protein. (Os09t0444200-01);Similar to predicted protein. (Os09t0444200-02)
Sequence	MSLLRRRKQPQPPPEQPNEDSSNGSDLDEKGKKKPGSSSSSAAPPPEAAAAAAKEATKRT RARWSCVDSCCWLVGCVCSAWWLLLFLYNAMPASFPQYVTEAITGPLPDPPGVKLQKEGL RAKHPVVFVPGIVTGGLELWEGHQCAEGLFRKRLWGGTFGDVYKRPLCWVEHMSLDNETG LDKPGIRVRPVTGLVAADYFVPGYFVWAVLIANLARIGYEEKTMYMAAYDWRLSFQNTEV RDQTLSRIKSNIELLVATNGGNRVVVIPHSMGVLYFLHFMKWVEAPPPMGGGGGPNWCAK HIKSVMNIGGPFLGVPKAVAGLFSSEAKDVAVARAIAPEVLDSDFLGLQTLRHLMRMTRT WDSTMSMIPKGGDTIWGDLDWSPEDGFECKAKNQKINDSEVSKDANGKNEVHPEPVKYGR IVSFGKDVAEAPSSEIEQIEFRDAVKGNNIAHSNTSCRDIWTEYHELGWGGIKAVADYKV YTAGSIIDLLRFVAPRMMQRGSVHFSYGIADNLDDPKYGHYKYWSNPLETKLPNAPEMEI FSMYGVGIPTERAYVYKLAPQAECYIPFQIDASAEGGDENSCLKGGVYLSNGDETVPVLS AGYMCAKGWRGKTRFNPSGSKTYVREYSHSPPSNLLEGRGTQSGAHVDIMGNFALIEDII RIAAGATGEELGGDQVYSDIFKWSDKIKLKL

Transcript Sequence

Transcript ID	Os09t0444200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:16543048:16549779:-1 gene:Os09g0444200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lecithin:cholesterol acyltransferase family protein. (Os09t0444200-01);Similar to predicted protein. (Os09t0444200-02)
Sequence	GGCATTCGAGGAGGCTAGCCTCTCTCTCCTCCCCGACCTCACAAGCGCGAACCCCGCGGA GCCGCCACCTCTCTCGCCTCCCCGCCTCCGCCGCGCCGCCTAGGGTTTCCACCGCCCCCG GGATGCGCGCGCCCCCTCGCCGGTAGCCTCCCCCCCGGTTCCCGCCGCCTCCGCCGCCGC CATGTCGCTGCTGCGGCGCCGGAAGCAGCCGCAGCCGCCGCCGGAGCAGCCGAACGAGGA CAGCAGCAACGGCTCCGACCTCGACGAGAAGGGGAAGAAGAAGCCGGGATCGTCGTCCTC CTCGGCGGCGCCTCCTCCGGAGGCGGCGGCGGCGGCGGCGAAGGAGGCGACGAAGCGGAC GAGGGCCAGGTGGTCGTGCGTGGACAGCTGCTGCTGGCTGGTGGGGTGCGTGTGCTCGGC GTGGTGGCTGCTGCTCTTCCTGTACAACGCGATGCCGGCGTCGTTCCCGCAGTACGTCAC GGAGGCGATCACGGGGCCGCTCCCGGACCCTCCCGGGGTCAAGCTGCAGAAGGAGGGGCT GCGGGCGAAGCACCCCGTCGTGTTCGTCCCGGGCATCGTCACCGGCGGCCTCGAGCTCTG GGAGGGGCACCAGTGCGCCGAGGGGCTCTTCCGCAAGCGCCTCTGGGGCGGCACGTTCGG CGACGTGTACAAGAGGCCTTTATGCTGGGTTGAACATATGTCACTGGACAATGAAACTGG ATTAGATAAACCAGGAATAAGAGTTCGGCCAGTCACAGGCCTAGTGGCAGCAGACTATTT TGTTCCTGGGTATTTTGTTTGGGCTGTTTTGATTGCAAATTTAGCTCGTATTGGATATGA AGAAAAGACCATGTACATGGCTGCATATGATTGGAGGTTATCTTTCCAGAACACTGAGGT TCGTGATCAAACTTTGAGCAGGATAAAAAGTAACATTGAACTCCTGGTAGCAACTAATGG TGGAAATAGGGTGGTGGTGATCCCACATTCTATGGGGGTTCTCTATTTTCTGCATTTTAT GAAGTGGGTTGAGGCTCCTCCTCCCATGGGTGGTGGTGGTGGTCCAAATTGGTGTGCAAA GCACATCAAATCTGTAATGAATATTGGCGGACCTTTCTTAGGAGTTCCTAAGGCTGTTGC AGGACTTTTCTCATCTGAAGCCAAAGATGTTGCTGTTGCTAGAGCCATTGCACCAGAAGT CCTAGACTCTGACTTCCTTGGACTTCAGACCTTACGCCATTTGATGCGTATGACCCGCAC ATGGGATTCAACAATGTCAATGATTCCTAAGGGCGGTGACACCATTTGGGGAGATTTGGA TTGGTCTCCAGAAGATGGTTTTGAGTGTAAAGCTAAGAATCAGAAAATCAATGATTCTGA GGTTTCTAAGGATGCTAACGGGAAGAATGAGGTTCATCCAGAACCTGTTAAGTATGGAAG AATTGTCTCTTTCGGTAAAGATGTAGCAGAGGCTCCATCTTCAGAAATTGAGCAGATAGA ATTTCGTGATGCTGTCAAAGGCAATAATATTGCCCACTCAAATACATCATGCCGGGATAT ATGGACAGAGTATCATGAATTAGGATGGGGCGGAATAAAGGCAGTTGCAGACTACAAGGT TTACACTGCTGGCTCCATTATAGATCTTCTTCGTTTTGTTGCTCCAAGGATGATGCAGCG TGGAAGTGTTCACTTTTCGTATGGGATTGCTGACAACTTGGATGATCCAAAGTACGGCCA CTACAAATACTGGTCAAATCCCTTGGAAACAAAATTACCAAATGCACCTGAAATGGAAAT ATTTTCAATGTATGGAGTTGGCATTCCGACGGAGAGAGCATATGTCTATAAATTAGCCCC ACAAGCAGAGTGCTATATACCTTTTCAGATAGACGCTTCAGCTGAGGGTGGGGATGAGAA TAGCTGTCTGAAAGGCGGCGTTTACCTGTCTAATGGTGATGAGACCGTACCAGTTCTTAG TGCAGGATATATGTGCGCAAAAGGCTGGCGAGGAAAAACACGCTTCAACCCTTCTGGCAG CAAGACCTACGTCAGAGAATACAGCCATTCTCCACCCTCAAATCTCCTCGAAGGCAGGGG CACCCAGAGTGGTGCGCACGTTGATATCATGGGGAATTTTGCTTTAATCGAGGATATTAT CAGGATTGCTGCTGGGGCAACTGGTGAAGAGCTTGGCGGTGACCAGGTTTATTCCGATAT ATTCAAATGGTCTGATAAGATTAAATTGAAACTATAAAACTTTAAAAAAGCATGGTAGTT TTGTAGGAGAATTATTTGTTTCCTGGCCAAAATTTTATGAGTTTTGATTCGATATTGTAA TATGATTTTTTTTACCTTTCCCTTAAGCTCTTAATTCAGTAGAGGCTGACTTGATTTGTA TTATTTTGTGATTTGAGCGGCATTGTATATTAAAATGTACAGATGTATTCATGGGAATTG TGTTACGATTTGAAGTTGAGTACTCCCCACATT