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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0442800-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:16470986:16474480:1 gene:Os09g0442800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os09t0442800-01);Conserved hypothetical protein. (Os09t0442800-02);Non-protein coding transcript. (Os09t0442800-03)
Sequence

ATGGCTTCCCCGGCGCCGCCGCCCACCGCCCGGCTCCGGCCTTCTCAGGCCGCCAGCAGT
GCCTCCTCCTCCTCCTTCCCTACATCCATCTGCGGCCTTGGCTCGCTCGGCGACGCCTCT
AGGGTTTCCTCCGTCTCCTTCCGGCGGCGTCCACCAGCATCGCCTCTCGTCCGGTGCTCC
CAAGACCCTGGCAAGATTGAAGTGTTTAATACTGAAGGAACCGAGCAGTCACAAGGAGGC
TCCACTGGTTCGATAAATCATGGCAAATACTCAACAAGGAGTTTCTCCTCTAAAGACTTG
CTTGAAAGACTAAAGAGGTATGGTGCTGCTGGTGTTTTGTCATATGGACTACTAAATACC
GTCTATTATGTCACGACATTTTTATTAGTTTGGTTTATTTTTTCTCCTGCTCCTGGTAAG
ATGGGTTATGCTGCGGCAGTAGAGAGATTCCTCAAGTTGATGGCAATGGTATGGGCTGGC
AGTCAAGTTACTAAAATTTTTCGAGCAGGAGGGGCACTTGCATTGGCTCCTTTTGTTGAT
AGAGGGCTAAGATGGTTCACAGTCAGGTTCAACTTCAAATCAGAAGGAAAGGCATTTGCT
ACAATTGTTGGGTTCTGTTTTGCACTTGCTGCTCTACTGTTCTTTGGATTAACAATACTT
TGGGCGTAA

Peptide Sequence

PEP ID

Os09t0442800-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:16470986:16474480:1 gene:Os09g0442800 transcript:Os09t0442800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os09t0442800-01);Conserved hypothetical protein. (Os09t0442800-02);Non-protein coding transcript. (Os09t0442800-03)
Sequence

MASPAPPPTARLRPSQAASSASSSSFPTSICGLGSLGDASRVSSVSFRRRPPASPLVRCS
QDPGKIEVFNTEGTEQSQGGSTGSINHGKYSTRSFSSKDLLERLKRYGAAGVLSYGLLNT
VYYVTTFLLVWFIFSPAPGKMGYAAAVERFLKLMAMVWAGSQVTKIFRAGGALALAPFVD
RGLRWFTVRFNFKSEGKAFATIVGFCFALAALLFFGLTILWA

Transcript Sequence

Transcript ID

Os09t0442800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:16470986:16474480:1 gene:Os09g0442800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os09t0442800-01);Conserved hypothetical protein. (Os09t0442800-02);Non-protein coding transcript. (Os09t0442800-03)
Sequence

AGATGCGCTAATCCACGGACGAGCTGTGACGAGCTTGACCGCGAGTCCGCGACGCGTGGG
CTCGGGGGTGAGACATGGCTTCCCCGGCGCCGCCGCCCACCGCCCGGCTCCGGCCTTCTC
AGGCCGCCAGCAGTGCCTCCTCCTCCTCCTTCCCTACATCCATCTGCGGCCTTGGCTCGC
TCGGCGACGCCTCTAGGGTTTCCTCCGTCTCCTTCCGGCGGCGTCCACCAGCATCGCCTC
TCGTCCGGTGCTCCCAAGACCCTGGCAAGATTGAAGTGTTTAATACTGAAGGAACCGAGC
AGTCACAAGGAGGCTCCACTGGTTCGATAAATCATGGCAAATACTCAACAAGGAGTTTCT
CCTCTAAAGACTTGCTTGAAAGACTAAAGAGGTATGGTGCTGCTGGTGTTTTGTCATATG
GACTACTAAATACCGTCTATTATGTCACGACATTTTTATTAGTTTGGTTTATTTTTTCTC
CTGCTCCTGGTAAGATGGGTTATGCTGCGGCAGTAGAGAGATTCCTCAAGTTGATGGCAA
TGGTATGGGCTGGCAGTCAAGTTACTAAAATTTTTCGAGCAGGAGGGGCACTTGCATTGG
CTCCTTTTGTTGATAGAGGGCTAAGATGGTTCACAGTCAGGTTCAACTTCAAATCAGAAG
GAAAGGCATTTGCTACAATTGTTGGGTTCTGTTTTGCACTTGCTGCTCTACTGTTCTTTG
GATTAACAATACTTTGGGCGTAATACACCTGTCGCTGCTGAAGAATCACATAGAAGACCA
AGAACACTGGTGAAATAAAAAGATTGGGTTCCTCCTCACATTGCGGAAGTGAACCTTTAT
GCAATCAGTAATGTGGCTTCCACTTTACTATTAATTGGCTTAGCTCTTCAAAACTATGGT
TCTCTCGGTACCATGTGTTTGTTTTTGAAAACAGGTTTCCATGTATTCTTGTATGAGTAG
CTATTCTCAATTCTCATTTACATAATTCACCTGCAAGTCTGCAACCTGGTGCTTCATTCG
TTAATCGTTCATAATCTGGAACATCTTCAGTGTACAACTGTACATATTCCTGTAACATGA
TCCTTGGGGAGTTGTGTGTGTTTTC