Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0442600-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:16455568:16458585:1 gene:Os09g0442600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastid (P)ppGpp synthase. (Os09t0442600-01)
Sequence	GCGCTGTGGCAAGATAGATCCGACGAGCCCGCCTTCGCCGGCGGCGGCGGCGGCTACTCG TCCTCGCCGCTCAAGTGGCGTGACCTCCACCACCACCATCACCACAGCCCCGTGTCGGTG TTCCAGGGCCCGTCGTCCTCTCCGGCGGCCTCCCGCAGCCCGCCGGCGTCGTGGCTCGCC GGCCGCGACCGCGACCGCGAGCGCCTCTTCGCCGGCTTCGTGCGCAACGCGCTGGGCTCC TGCGTTGACTACGCCCCGGCACTCAGCCCGCGGTCGGAGGTCGGCGGCGGCGAGCTCGCG TTCGAGCTCGACGAGAACCTCGCGGAGGCGAGCCCCGCCTGCGAGCCGTGCGCCCGGGAG CTCCTCGCCGGCGCCCAGGCTCGCCACCGCATCTTCCACGAGGAGCTCGTCGTGAAGACC TTCTTCGAGGCCGAGAAGGCTCACCGTGGCCAGACCCGGGCGAGTGGCGATCCATACTTG CAACATTGTGTAGAGACAGCCGTGCTTCTGGCCAATATTGGGGCGAATTCGACGGTCGTC TCCGCCGGGCTTCTGCACGACACCATTGACGATTCATTCATTGATTATGATCACATCTTT CACATGTTCGGAGCCGGCGTGGCCGATCTCGTTGAGGGGGTCTCAAAGTTGAGCCACTTG AGCAAACTTGCTCGTGATAACAACACAGCAAGCAGGATTGTTGAAGCAGATCGATTGCAC ACAATGCTTCTTGCAATGGCTGATGCACGGGCAGTTCTAATAAAATTAGCTGACCGTGTG CATAACATGAAAACTTTGGAAGCTTTACCTCTTGGTAAACAACAAAGATTTGCTAAGGAG ACCATGGAGATCTTTGTTCCTTTGGCTAATCGATTAGGGATTGCCAGCTGGAAAGACCAG TTGGAAAATCTTTGCTTCAAGCATCTGAATCCAGAAGAGCACAAGGATCTATCATCTAAA CTAACCAAATCCTTTGACGAAGTGCTAATCACATCTGCTGTGGACAAACTAGATAGAGGT CTGAGGGATGCAGGCCTCTCATATCACAATCTTTCTGGGAGGCACAAAAGCCTATACAGT ATTCACAACAAGATGCTAAAGAAGAATTTGACAATGGATGAGATCCATGATATCCATGGC CTGCGTCTCGTGTTTGAGAAGGAGGAAGATTGCTATCGAGCACTTGATGTTGTTCATGAA CTATGGCCCCAAGTTCCTGGAAGATTTAAGGACTACATATCTCGTCCAAAATTAAATGGG TATCGATCATTGCACACTGTTGTCATGAGCGAGAATGTCCACCCATTTGAAGTCCAGATC CGTACAAAAGAGATGCACCTGCAAGCTGAGTATGGATTCGCAGCACACTGGAGGTACAAG GAAGGCACCTGTAGGCACTCCTTTGTACTCCAGATGGTGGAATGGGCTAGGTGGGTGCTT ACATGGCAATGTGAAGCAATGAACAAAGAACGACCTGCATCTCTAGGCGACAGTGATGCA ATTAGGCCACCCTGTCCATTTCCCATGCATTCAGAAGACTGCCCTTACTCATATACTCGG CAATGCGACCATGATGGACCGATATTTGTCATCCTACTGGAACATGACAAGATGTCTGTG CAAGAATTCCAAGCAAACTCAACTGTAATGAACCTCATGGATCGAGTTGGGACCAACACT CCAAGATGGAGTCCCTACCGCATCCCCATGAAGGAAGATCTGCGACCGAAGGTTAACCAC GAGCCCATAAGCGATCTGAACCGGAAGCTCAGCATGGGGGATGTGGTGGAGCTGACACCG GCCCTTCCTCACGAGTCGCTCCCCAATTACCGGGAGGAGATTCAGCGCATGTACGACCGT GGCGGATTCGCCCTCGCCACCCGGGGTGGCAGCTCGAGGCGGTGA

Peptide Sequence

PEP ID	Os09t0442600-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:16455568:16458585:1 gene:Os09g0442600 transcript:Os09t0442600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastid (P)ppGpp synthase. (Os09t0442600-01)
Sequence	ALWQDRSDEPAFAGGGGGYSSSPLKWRDLHHHHHHSPVSVFQGPSSSPAASRSPPASWLA GRDRDRERLFAGFVRNALGSCVDYAPALSPRSEVGGGELAFELDENLAEASPACEPCARE LLAGAQARHRIFHEELVVKTFFEAEKAHRGQTRASGDPYLQHCVETAVLLANIGANSTVV SAGLLHDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLARDNNTASRIVEADRLH TMLLAMADARAVLIKLADRVHNMKTLEALPLGKQQRFAKETMEIFVPLANRLGIASWKDQ LENLCFKHLNPEEHKDLSSKLTKSFDEVLITSAVDKLDRGLRDAGLSYHNLSGRHKSLYS IHNKMLKKNLTMDEIHDIHGLRLVFEKEEDCYRALDVVHELWPQVPGRFKDYISRPKLNG YRSLHTVVMSENVHPFEVQIRTKEMHLQAEYGFAAHWRYKEGTCRHSFVLQMVEWARWVL TWQCEAMNKERPASLGDSDAIRPPCPFPMHSEDCPYSYTRQCDHDGPIFVILLEHDKMSV QEFQANSTVMNLMDRVGTNTPRWSPYRIPMKEDLRPKVNHEPISDLNRKLSMGDVVELTP ALPHESLPNYREEIQRMYDRGGFALATRGGSSRR

Transcript Sequence

Transcript ID	Os09t0442600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:16455568:16458585:1 gene:Os09g0442600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plastid (P)ppGpp synthase. (Os09t0442600-01)
Sequence	GCGCTGTGGCAAGATAGATCCGACGAGCCCGCCTTCGCCGGCGGCGGCGGCGGCTACTCG TCCTCGCCGCTCAAGTGGCGTGACCTCCACCACCACCATCACCACAGCCCCGTGTCGGTG TTCCAGGGCCCGTCGTCCTCTCCGGCGGCCTCCCGCAGCCCGCCGGCGTCGTGGCTCGCC GGCCGCGACCGCGACCGCGAGCGCCTCTTCGCCGGCTTCGTGCGCAACGCGCTGGGCTCC TGCGTTGACTACGCCCCGGCACTCAGCCCGCGGTCGGAGGTCGGCGGCGGCGAGCTCGCG TTCGAGCTCGACGAGAACCTCGCGGAGGCGAGCCCCGCCTGCGAGCCGTGCGCCCGGGAG CTCCTCGCCGGCGCCCAGGCTCGCCACCGCATCTTCCACGAGGAGCTCGTCGTGAAGACC TTCTTCGAGGCCGAGAAGGCTCACCGTGGCCAGACCCGGGCGAGTGGCGATCCATACTTG CAACATTGTGTAGAGACAGCCGTGCTTCTGGCCAATATTGGGGCGAATTCGACGGTCGTC TCCGCCGGGCTTCTGCACGACACCATTGACGATTCATTCATTGATTATGATCACATCTTT CACATGTTCGGAGCCGGCGTGGCCGATCTCGTTGAGGGGGTCTCAAAGTTGAGCCACTTG AGCAAACTTGCTCGTGATAACAACACAGCAAGCAGGATTGTTGAAGCAGATCGATTGCAC ACAATGCTTCTTGCAATGGCTGATGCACGGGCAGTTCTAATAAAATTAGCTGACCGTGTG CATAACATGAAAACTTTGGAAGCTTTACCTCTTGGTAAACAACAAAGATTTGCTAAGGAG ACCATGGAGATCTTTGTTCCTTTGGCTAATCGATTAGGGATTGCCAGCTGGAAAGACCAG TTGGAAAATCTTTGCTTCAAGCATCTGAATCCAGAAGAGCACAAGGATCTATCATCTAAA CTAACCAAATCCTTTGACGAAGTGCTAATCACATCTGCTGTGGACAAACTAGATAGAGGT CTGAGGGATGCAGGCCTCTCATATCACAATCTTTCTGGGAGGCACAAAAGCCTATACAGT ATTCACAACAAGATGCTAAAGAAGAATTTGACAATGGATGAGATCCATGATATCCATGGC CTGCGTCTCGTGTTTGAGAAGGAGGAAGATTGCTATCGAGCACTTGATGTTGTTCATGAA CTATGGCCCCAAGTTCCTGGAAGATTTAAGGACTACATATCTCGTCCAAAATTAAATGGG TATCGATCATTGCACACTGTTGTCATGAGCGAGAATGTCCACCCATTTGAAGTCCAGATC CGTACAAAAGAGATGCACCTGCAAGCTGAGTATGGATTCGCAGCACACTGGAGGTACAAG GAAGGCACCTGTAGGCACTCCTTTGTACTCCAGATGGTGGAATGGGCTAGGTGGGTGCTT ACATGGCAATGTGAAGCAATGAACAAAGAACGACCTGCATCTCTAGGCGACAGTGATGCA ATTAGGCCACCCTGTCCATTTCCCATGCATTCAGAAGACTGCCCTTACTCATATACTCGG CAATGCGACCATGATGGACCGATATTTGTCATCCTACTGGAACATGACAAGATGTCTGTG CAAGAATTCCAAGCAAACTCAACTGTAATGAACCTCATGGATCGAGTTGGGACCAACACT CCAAGATGGAGTCCCTACCGCATCCCCATGAAGGAAGATCTGCGACCGAAGGTTAACCAC GAGCCCATAAGCGATCTGAACCGGAAGCTCAGCATGGGGGATGTGGTGGAGCTGACACCG GCCCTTCCTCACGAGTCGCTCCCCAATTACCGGGAGGAGATTCAGCGCATGTACGACCGT GGCGGATTCGCCCTCGCCACCCGGGGTGGCAGCTCGAGGCGGTGACAGTACTTCGACAAT CTTAACAGCCCCACCGCATCATTGTACAATGTTGTCCAACCTAATTCAATTCATTGTAAA TACAACCCTAATTCTTCGCAGCCGCAGAAACCGGAACAACACCCCCACCAAGTTCTGTAA GCTGGGGGGAGTCTGTTCTGCTGCCTGGAGTCTGTTAGCTTGACCCAGGAGGCTGCAATG TGTAAAAGTAAAAACAGTGTATAATCTTTTCCAAGGTAGTTCCAGCTTCTCCCAGGATTT GTGGAGAGGAGGCTGTAGCAGAATCT