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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0439800-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:16307780:16310837:-1 gene:Os09g0439800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEEPER ROOTING 1 description:Control of root system architecture, Drought avoidance (Os09t0439800-01)
Sequence

ATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTT
CCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTC
AGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAG
GTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTT
ACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGAT
CAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGAT
GGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAA
TCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTG
CTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACA
TTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCG
CAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAA
ATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTC
AAAACTGATTCAGAGTATATTGTGCTTGAAATGTAA

Peptide Sequence

PEP ID

Os09t0439800-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:16307780:16310837:-1 gene:Os09g0439800 transcript:Os09t0439800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEEPER ROOTING 1 description:Control of root system architecture, Drought avoidance (Os09t0439800-01)
Sequence

MKIFSWVANKISGKQEANRFPANSSAPYRANVSDCRKDEFSDWPQSLLAIGTFGNKQIEE
VAQVENSSDNVQSVQDTVKFTEEEVDKIRKEFETLLAIKDQAEAQRSHDDDQVGLQKRAD
GEDNEKHIRQLINKRIIVSKSKNSLGKKGNTLKPRSVASLLKLFMCKGGFTSVVPEPRNT
FPQSRMEKLLKAILQKKIHPQNSSTLVAKRHLDWKPDETEINECLEDALRDLDDDGAKWV
KTDSEYIVLEM

Transcript Sequence

Transcript ID

Os09t0439800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:16307780:16310837:-1 gene:Os09g0439800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEEPER ROOTING 1 description:Control of root system architecture, Drought avoidance (Os09t0439800-01)
Sequence

AGATGAAGTATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTT
GGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAA
TTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCC
ATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAA
TCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTG
GGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGT
CAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACAT
TTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGT
CAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCG
AAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAG
TAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCA
ACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCA
AGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCG
TAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAA
TATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGG
ACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAG
ACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAA
GTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGT
TTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGA
TCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAG
GAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAA
GAACGCATTCAATTTTTTCAAC