Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0439400-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:16282843:16287189:1 gene:Os09g0439400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os09t0439400-01)
Sequence	ATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCGCGCGCCGCGGCCTCCTCCCCGCGC GCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCGCGGGCGGGCGGGGTGGGCGGGCGG CACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATCTCGCCGTCGTACAGGGCGGTGCTG CTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTCCTGTGGCAGAGCACCTCGGTGGGC CGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCGAAGCGCGCGCCGTCCGCCCAGGGG ATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGATCTGAGGGAGTTCGGGGGCGTCGGG GACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCGGCGGTGGCGTCCATCGCGGAGAGA GGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACC AGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGA TATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCT AGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAAT GGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAAT CACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATC ACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATA TCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCA GATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATT GCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATT ATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAG ATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGA GGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGG AACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCAC CCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCA ATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTG AAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTC CAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAAC CTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCT GATATCGACTACAGTTTTTGA

Peptide Sequence

PEP ID	Os09t0439400-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:16282843:16287189:1 gene:Os09g0439400 transcript:Os09t0439400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os09t0439400-01)
Sequence	MGETGVAVASSPRAAASSPRAAASSASVASSPRAGGVGGRHHHRRWGGAAAISPSYRAVL LALWLVGFALVFLWQSTSVGRARLYTRPPLLPKRAPSAQGMGQWVAAPPVYDLREFGGVG DGRTLNTEAFVAAVASIAERGGGRLVVPAGRWLTAPFNLTSRMTLFLAAGAEILGVQDER YWPLMSPLPSYGYGREHRGPRYGSLIHGQDLKDVTITGQNGTINGQGQSWWSKFRKKVLN HTRGPLVQLMRSSNITISNITLRDSPFWTLHIYDCKDVTISDTTILAPIVGAPNTDGIDP DSCENVVIKNCYISVGDDGIAIKSGWDQYGIAYGRPSTNIIIHNVTIRSMVSAGVSIGSE MSGGVSNVLVENVHIWDSRRGVRIKTAPGRGAYVSNITYRNITLEHIRVGIVIKTDYNEH PDEGFDPKAVPIIENISYSSIHGHGVRVPVRIQGSAEIPVKNVTFHDMSVGLVDRKNHVF QCSFVQGQVIGYVFPVPCKNLDLYNERRELVKQSALQNISDIDYSF

Transcript Sequence

Transcript ID	Os09t0439400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:16282843:16287189:1 gene:Os09g0439400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os09t0439400-01)
Sequence	GCTCCTTTTAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCA TCGCCTCCGCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCG GTGCGCGCCGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCT CCTCCCCGCGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGT CGTCGCCGCGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGG CGGCGATCTCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGC TCGTGTTCCTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGC TGCTGCCGAAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGG TCTACGATCTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGT TCGTGGCGGCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCG GGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCG GCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCAT CATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAG ACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTT GGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCA TGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACAC TTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTG TTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAA ACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATG GAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCA TGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGG TAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAA GAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTG GCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAG TTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAG TCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAG TCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCA TTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGC TGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCG GCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAA CAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAAT GTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACT TCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGC AACAAATTTCTCTGTTGAGAGCAATAAAGTTCTTCGTTTACACATCC