Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0433700-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:15921631:15924038:-1 gene:Os09g0433700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 27 description:Similar to Pectin methylesterase (Fragment). (Os09t0433700-01)
Sequence	ATGTCGTCGGCGTTCGGCGACTTCGGCCCGCTCACCGAGCGGCGCCGCGCCGAGAAGGCG CGGCAGCAGCGCAGGCGCATCATGATCGCCCTCGGCACGGTGTCCATCATCATTATCCTC ATCGTCATGGGCGCCGCCGCCATCACGTACAGCGGGAAGAAATCCGAGGAGGACGAAGGC GGCTCCAAGGGCTCGTCGAAGGGGAAATCGAAAGGCGGCGGAGGTGGAGACGACGAAGAC GGCGGCGGCGGCGGCGGCAAAGCGGACCTGCGCGCCGTGTCGAAGAGCATCAAGATGATG TGCGCGCAGACGGACTTCGCGGACTCGTGCGCCACGAGCATCGGCAAGGCGGCGAACGCC AGCGTGTCGTCGCCCAAGGACATCATCCGCACCGCCGTGGACGTGATCGGCGGCGCGGTC GACCAGGCGTTCGACCGCGCCGACCTGATCATGAGCAACGACCCGCGCGTGAAGGCCGCC GTCGCCGACTGCAAGGAGCTCTTCGACGACGCCAAGGACGACCTCAACTGCACGCTCAAG GGCATCGACGGCAAGGACGGCCTCAAACAGGGCTTCCAGCTCCGCGTCTGGCTGAGCGCG GTGATCGCCAACATGGAGACCTGCATCGACGGCTTCCCCGACGGCGAGTTCAGGGACAAG GTCAAGGAGTCGTTCAACAACGGCAGGGAGTTCACCAGCAACGCCCTGGCGCTCATCGAG AAGGCCTCCTCGTTCCTCTCCGCCCTCAAGGGCTCCCAACGCCGGCTGCTCGCCGGGGAA GAAGACAACGGAGGAGGAGCAGCGGACCCCCACCTGGCCCTCGCCGAGGACGGCATCCCG GAGTGGGTGCCCGACGGCGACCGGAGGGTGCTCAAGGGCGGCGGGTTCAAGAACAACCTC ACGCCGAACGTCATCGTCGCCAAGGACGGCAGCGGCAAGTTCAAGACCATCAACGAAGCT CTCGCCGCCATGCCCAAGACCTACAGTGGAAGGTACGTGATCTACGTGAAGGAGGGCGTG TACGCCGAGTACGTGACCATCACCAAGAAGATGGCGAGTGTCACCATGTACGGCGACGGC TCCAGGAAGTCCATCGTCACCGGCAGCAAGAACTTCGCCGACGGCCTCACCACCTTCAAG ACAGCAACCTTCGCGGCGCAAGGGGACGGGTTCATGGCGATCGGGATGGGGTTCCAGAAC ACGGCGGGGGCGGCGAAGCACCAGGCGGTGGCGCTGCTGGTGCAGTCGGACAAGTCGGTG TTCCTCAACTGCTGGATGGACGGGTTCCAGGACACGCTGTACGCGCACTCCAAGGCGCAG TTCTACCGCAACTGCGTCATCACGGGCACCATCGACTTCGTCTTCGGCGACGCCGCCGCC GTGTTCCAGAACTGCGTCCTCACGCTCCGCCGCCCCATGGACAACCAGCAGAACATCGCC ACGGCGCAGGGCCGCGCCGACGGCCGCGAGGCCACGGGGTTCGTGCTCCAGAAGTGCGAG TTCAACGCCGAGCCGGCGCTCACCGACGCCAAGCTTCCCCCCATCCGCAACTACCTCGGC CGGCCGTGGCGCGAGTTCTCCCGCACCGTCATCATGGAGTCCGACATCCCGGCGATCATC GACAAGGCCGGGTACATGCCGTGGAACGGCGAGTTCGCGCTCAAGACGCTCTACTACGCC GAGTACGCCAACAAGGGGCCCGGCGCCGACACGGCGGGGCGCGTCGCGTGGCCGGGGTAC AAGAAGGTGATCAGCAAGGCGGACGCGACCAAGTTCACCGTCGACAACTTCCTGCACGCA AAGCCATGGATCGATCCCACCGGCACGCCGGTCAAGTACGACTTCTTCACTTGA

Peptide Sequence

PEP ID	Os09t0433700-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:15921631:15924038:-1 gene:Os09g0433700 transcript:Os09t0433700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 27 description:Similar to Pectin methylesterase (Fragment). (Os09t0433700-01)
Sequence	MSSAFGDFGPLTERRRAEKARQQRRRIMIALGTVSIIIILIVMGAAAITYSGKKSEEDEG GSKGSSKGKSKGGGGGDDEDGGGGGGKADLRAVSKSIKMMCAQTDFADSCATSIGKAANA SVSSPKDIIRTAVDVIGGAVDQAFDRADLIMSNDPRVKAAVADCKELFDDAKDDLNCTLK GIDGKDGLKQGFQLRVWLSAVIANMETCIDGFPDGEFRDKVKESFNNGREFTSNALALIE KASSFLSALKGSQRRLLAGEEDNGGGAADPHLALAEDGIPEWVPDGDRRVLKGGGFKNNL TPNVIVAKDGSGKFKTINEALAAMPKTYSGRYVIYVKEGVYAEYVTITKKMASVTMYGDG SRKSIVTGSKNFADGLTTFKTATFAAQGDGFMAIGMGFQNTAGAAKHQAVALLVQSDKSV FLNCWMDGFQDTLYAHSKAQFYRNCVITGTIDFVFGDAAAVFQNCVLTLRRPMDNQQNIA TAQGRADGREATGFVLQKCEFNAEPALTDAKLPPIRNYLGRPWREFSRTVIMESDIPAII DKAGYMPWNGEFALKTLYYAEYANKGPGADTAGRVAWPGYKKVISKADATKFTVDNFLHA KPWIDPTGTPVKYDFFT

Transcript Sequence

Transcript ID	Os09t0433700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:15921631:15924038:-1 gene:Os09g0433700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 27 description:Similar to Pectin methylesterase (Fragment). (Os09t0433700-01)
Sequence	GGCCTTCTTCCTCCTCCGTCCTCTCTGCCAATGGTGATGTCAGGCAGAGAGTGTGAGAGA GAAAGAAGAAGCAGTCAATAAGGAGGAGGAGAAAGAGGAGTGGGGGAAGAAGAGAAGAGC TAGGGATAGATTCCGGCCATGTCGTCGGCGTTCGGCGACTTCGGCCCGCTCACCGAGCGG CGCCGCGCCGAGAAGGCGCGGCAGCAGCGCAGGCGCATCATGATCGCCCTCGGCACGGTG TCCATCATCATTATCCTCATCGTCATGGGCGCCGCCGCCATCACGTACAGCGGGAAGAAA TCCGAGGAGGACGAAGGCGGCTCCAAGGGCTCGTCGAAGGGGAAATCGAAAGGCGGCGGA GGTGGAGACGACGAAGACGGCGGCGGCGGCGGCGGCAAAGCGGACCTGCGCGCCGTGTCG AAGAGCATCAAGATGATGTGCGCGCAGACGGACTTCGCGGACTCGTGCGCCACGAGCATC GGCAAGGCGGCGAACGCCAGCGTGTCGTCGCCCAAGGACATCATCCGCACCGCCGTGGAC GTGATCGGCGGCGCGGTCGACCAGGCGTTCGACCGCGCCGACCTGATCATGAGCAACGAC CCGCGCGTGAAGGCCGCCGTCGCCGACTGCAAGGAGCTCTTCGACGACGCCAAGGACGAC CTCAACTGCACGCTCAAGGGCATCGACGGCAAGGACGGCCTCAAACAGGGCTTCCAGCTC CGCGTCTGGCTGAGCGCGGTGATCGCCAACATGGAGACCTGCATCGACGGCTTCCCCGAC GGCGAGTTCAGGGACAAGGTCAAGGAGTCGTTCAACAACGGCAGGGAGTTCACCAGCAAC GCCCTGGCGCTCATCGAGAAGGCCTCCTCGTTCCTCTCCGCCCTCAAGGGCTCCCAACGC CGGCTGCTCGCCGGGGAAGAAGACAACGGAGGAGGAGCAGCGGACCCCCACCTGGCCCTC GCCGAGGACGGCATCCCGGAGTGGGTGCCCGACGGCGACCGGAGGGTGCTCAAGGGCGGC GGGTTCAAGAACAACCTCACGCCGAACGTCATCGTCGCCAAGGACGGCAGCGGCAAGTTC AAGACCATCAACGAAGCTCTCGCCGCCATGCCCAAGACCTACAGTGGAAGGTACGTGATC TACGTGAAGGAGGGCGTGTACGCCGAGTACGTGACCATCACCAAGAAGATGGCGAGTGTC ACCATGTACGGCGACGGCTCCAGGAAGTCCATCGTCACCGGCAGCAAGAACTTCGCCGAC GGCCTCACCACCTTCAAGACAGCAACCTTCGCGGCGCAAGGGGACGGGTTCATGGCGATC GGGATGGGGTTCCAGAACACGGCGGGGGCGGCGAAGCACCAGGCGGTGGCGCTGCTGGTG CAGTCGGACAAGTCGGTGTTCCTCAACTGCTGGATGGACGGGTTCCAGGACACGCTGTAC GCGCACTCCAAGGCGCAGTTCTACCGCAACTGCGTCATCACGGGCACCATCGACTTCGTC TTCGGCGACGCCGCCGCCGTGTTCCAGAACTGCGTCCTCACGCTCCGCCGCCCCATGGAC AACCAGCAGAACATCGCCACGGCGCAGGGCCGCGCCGACGGCCGCGAGGCCACGGGGTTC GTGCTCCAGAAGTGCGAGTTCAACGCCGAGCCGGCGCTCACCGACGCCAAGCTTCCCCCC ATCCGCAACTACCTCGGCCGGCCGTGGCGCGAGTTCTCCCGCACCGTCATCATGGAGTCC GACATCCCGGCGATCATCGACAAGGCCGGGTACATGCCGTGGAACGGCGAGTTCGCGCTC AAGACGCTCTACTACGCCGAGTACGCCAACAAGGGGCCCGGCGCCGACACGGCGGGGCGC GTCGCGTGGCCGGGGTACAAGAAGGTGATCAGCAAGGCGGACGCGACCAAGTTCACCGTC GACAACTTCCTGCACGCAAAGCCATGGATCGATCCCACCGGCACGCCGGTCAAGTACGAC TTCTTCACTTGAATCCGAACGACCCTAGCTACCCGTAGCGGATCGGAGGAAGTCGAGAGG ACAGGTAGGGGGGTTTCGTTGGATATATCTTGGATGGCGAAAGAGTTTCGGCTGTCACTA TACACGAGTGGAAATGTTGCGAGGTGTACGCATGAACTCGCTTGTTGATCAGATATTGAT CAGAGTTGAACGCGTGCTGTGTGCCTTAGTTTTCATTTGCGTTTGTATACTGGCTGTACG TATGTGTTTATGTAACTGTACATGATTTTTTTTTCTCGATCATGATTATATTTGAGTATA GCAGATCATTTTTTTTTCCATGGAGAGTATAGCAGATCATGAATACAGAGGTTCAGATTT ACAGC