Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0423300-02
CDS Infomation	cds chromosome:IRGSP-1.0:9:15329632:15332143:1 gene:Os09g0423300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os09t0423300-01);Similar to pentatricopeptide (PPR) repeat-containing protein. (Os09t0423300-02);Hypothetical conserved gene. (Os09t0423300-03)
Sequence	ATTGCTGCAATTTTGTCCAGTGTTACCCATGAATCTAGCATCGAGGAGTGCAATTCTGTT CTCATCTGTCTCGAGAAGCATAGTGATAAGACAGCTCTTGGTTTCTTTGAGTGGATGAAG GCTAATGGAAAGCTGAAGGGAAATGCTGAGGCGTATCACCTAGCGCTTCAAGCGATCGCC TGGAAGGAGGATTGGGAAGCAGCTGGACAGTTGCTTCATGAAATGGTTGCTGATTCGGGT TGCGCTCTGGATGCTCAAGCATTTAATGGGCTTATATATGTTTGTGCCAAACGGAGGCTT GTTGACTGGGGAACAAAGTGGCTTCATATGATGCTTGAAAGAGATGTGCAGCCGAATGTG TCTACAGTTGGTATGCTTATGGGACTTTACCAGAGGATTGGGAACCTTCCAGAAGCTGAA TTCACTTTTGCTAAAATGAGGAAATGTGGCATTAAGTGTGTTAATGCCTACTCAGCTATG GTTACTTTGTATACACGGTTAGGCCATTTTGCCAAATCTGAGGAGGTTATTACTCTAATG AATAATGATGAAGTAGTTCCGAACATGGAAAATTGGTTAGTGCGGCTAAATGCTTATTGT CAACAAGGCAAAATGGAAGAAGCTGAATTGGTATTGAAGTCCTTGGTAGATGAAGGAATT GCTCTGAATGTTGTGGCATACAATACGGTAATTACAGGTTATGGAAAAGTTTCTGACATG CAGAAGGCAATGGAAGTGTTTGATAGGCTTAAGAGTGCAGGTTTAGCTCCTGATGAAACA ACCTATAGATCAATGATTGAAGGTTTTGGTAGAGCAGACAAATACAAACAGGCAATTTTG TACTACAGGAAACTCCGAAACTCTGGATTTAAACCAAATGCATCCAACTTTTACACAATG ATTAACTTGCTAGCAAGACATGATGACAGTGAAGGTGCAACAGAGATTCTCGAGGACATG CGGGCAGCAGGCTGCCAGTGTTCATCGATTGTCACTGTTCTTGTCCGAGCATATGGGTCA GTAGGAAGGATGCATAAAGTTCTTCAGATTCTAAAAGCATGCTTCTATAAGAAGATTTTG TTTGATGCCACCTCATGCTCTATTTTAGTAACAGGATTCGTTCAAAATTCTCTAGTAGAA GAAGCTATGCGTGTTTTGCGCGAAAAGAAGTGGAAAGATTCTGATTTTGAAGACAATTTA TATCATATCTTGATCTGTTCTTGCAAAGAGGCTGGCTGTTGTGATGATGCTGTCAGGATA TATAATCAGATGCCTAAGTCGGCAACACATCCAAATCTGCGTATTTATTGCAGTATGATT GATGTTTTCAGCATCATGGAGAGATTCACTGATGCTGAAGCTTTATATCTTGAACTGAAA GCATCATCCTGTGTTCTTGACATGATTGCCTACAGCGTAATTGTGAGGATGTATACTAAA GCTGGGCGACCAGAAGATGCCTGTTTGGTTTTGGAAGACATGGAGAAACAAAAGGAAATA GTTCCTGATAAGTACCTTTTCCTTGACATGCTTCGGACTTACCAAAAATGTGGCCTACTC GAGAAATTATCTGATACATATTACTGGATACTAAAGAGTCAAGTTGAATTGGATGAAGCC ATGTACAACTGCATTATAAACTGTTGTGGGCGGGCAATACCGGTTGATGAGCTCTCAAGA ATTTTTGATGAAATGATTCAACAAGGGCACTTGGCCAACACTGTTACCCTCAATGTATTG CTAGACATATATGGAAAAGCCGGGCTTTTTAATAAGGCAGAAAAGGTATTTCTCATGGCT CGCAAGCAGGGTATGGCAGATATCATATCATACAATACCATTATTGCCGCGCATGCAAAA AATGGGGATTTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCCT GTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGAG GAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATACT TACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGTT CTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATA AAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGG ATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAGG AATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGCT GCAACTCGAACATGA

Peptide Sequence

PEP ID	Os09t0423300-02
PEP Infomation	pep chromosome:IRGSP-1.0:9:15329632:15332143:1 gene:Os09g0423300 transcript:Os09t0423300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os09t0423300-01);Similar to pentatricopeptide (PPR) repeat-containing protein. (Os09t0423300-02);Hypothetical conserved gene. (Os09t0423300-03)
Sequence	IAAILSSVTHESSIEECNSVLICLEKHSDKTALGFFEWMKANGKLKGNAEAYHLALQAIA WKEDWEAAGQLLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHMMLERDVQPNV STVGMLMGLYQRIGNLPEAEFTFAKMRKCGIKCVNAYSAMVTLYTRLGHFAKSEEVITLM NNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDM QKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTM INLLARHDDSEGATEILEDMRAAGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKIL FDATSCSILVTGFVQNSLVEEAMRVLREKKWKDSDFEDNLYHILICSCKEAGCCDDAVRI YNQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKASSCVLDMIAYSVIVRMYTK AGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEA MYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMA RKQGMADIISYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLE EFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLI KAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVKWSLWMKQTGVA ATRT

Transcript Sequence

Transcript ID	Os09t0423300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:15329632:15332143:1 gene:Os09g0423300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os09t0423300-01);Similar to pentatricopeptide (PPR) repeat-containing protein. (Os09t0423300-02);Hypothetical conserved gene. (Os09t0423300-03)
Sequence	TATTGCTGCAATTTTGTCCAGTGTTACCCATGAATCTAGCATCGAGGAGTGCAATTCTGT TCTCATCTGTCTCGAGAAGCATAGTGATAAGACAGCTCTTGGTTTCTTTGAGTGGATGAA GGCTAATGGAAAGCTGAAGGGAAATGCTGAGGCGTATCACCTAGCGCTTCAAGCGATCGC CTGGAAGGAGGATTGGGAAGCAGCTGGACAGTTGCTTCATGAAATGGTTGCTGATTCGGG TTGCGCTCTGGATGCTCAAGCATTTAATGGGCTTATATATGTTTGTGCCAAACGGAGGCT TGTTGACTGGGGAACAAAGTGGCTTCATATGATGCTTGAAAGAGATGTGCAGCCGAATGT GTCTACAGTTGGTATGCTTATGGGACTTTACCAGAGGATTGGGAACCTTCCAGAAGCTGA ATTCACTTTTGCTAAAATGAGGAAATGTGGCATTAAGTGTGTTAATGCCTACTCAGCTAT GGTTACTTTGTATACACGGTTAGGCCATTTTGCCAAATCTGAGGAGGTTATTACTCTAAT GAATAATGATGAAGTAGTTCCGAACATGGAAAATTGGTTAGTGCGGCTAAATGCTTATTG TCAACAAGGCAAAATGGAAGAAGCTGAATTGGTATTGAAGTCCTTGGTAGATGAAGGAAT TGCTCTGAATGTTGTGGCATACAATACGGTAATTACAGGTTATGGAAAAGTTTCTGACAT GCAGAAGGCAATGGAAGTGTTTGATAGGCTTAAGAGTGCAGGTTTAGCTCCTGATGAAAC AACCTATAGATCAATGATTGAAGGTTTTGGTAGAGCAGACAAATACAAACAGGCAATTTT GTACTACAGGAAACTCCGAAACTCTGGATTTAAACCAAATGCATCCAACTTTTACACAAT GATTAACTTGCTAGCAAGACATGATGACAGTGAAGGTGCAACAGAGATTCTCGAGGACAT GCGGGCAGCAGGCTGCCAGTGTTCATCGATTGTCACTGTTCTTGTCCGAGCATATGGGTC AGTAGGAAGGATGCATAAAGTTCTTCAGATTCTAAAAGCATGCTTCTATAAGAAGATTTT GTTTGATGCCACCTCATGCTCTATTTTAGTAACAGGATTCGTTCAAAATTCTCTAGTAGA AGAAGCTATGCGTGTTTTGCGCGAAAAGAAGTGGAAAGATTCTGATTTTGAAGACAATTT ATATCATATCTTGATCTGTTCTTGCAAAGAGGCTGGCTGTTGTGATGATGCTGTCAGGAT ATATAATCAGATGCCTAAGTCGGCAACACATCCAAATCTGCGTATTTATTGCAGTATGAT TGATGTTTTCAGCATCATGGAGAGATTCACTGATGCTGAAGCTTTATATCTTGAACTGAA AGCATCATCCTGTGTTCTTGACATGATTGCCTACAGCGTAATTGTGAGGATGTATACTAA AGCTGGGCGACCAGAAGATGCCTGTTTGGTTTTGGAAGACATGGAGAAACAAAAGGAAAT AGTTCCTGATAAGTACCTTTTCCTTGACATGCTTCGGACTTACCAAAAATGTGGCCTACT CGAGAAATTATCTGATACATATTACTGGATACTAAAGAGTCAAGTTGAATTGGATGAAGC CATGTACAACTGCATTATAAACTGTTGTGGGCGGGCAATACCGGTTGATGAGCTCTCAAG AATTTTTGATGAAATGATTCAACAAGGGCACTTGGCCAACACTGTTACCCTCAATGTATT GCTAGACATATATGGAAAAGCCGGGCTTTTTAATAAGGCAGAAAAGGTATTTCTCATGGC TCGCAAGCAGGGTATGGCAGATATCATATCATACAATACCATTATTGCCGCGCATGCAAA AAATGGGGATTTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCC TGTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGA GGAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATAC TTACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGT TCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGAT AAAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAG GATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAG GAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGC TGCAACTCGAACATGATGTGCCTAAGAATTCAGAGTTTTGGTTGCATGCAAATTCTGGCA TCCGCACACGTTTATATTTCATCTTTCAGTAGAGTACATACATACATGTGAGTGACATTG TACAGAGAACTATTTCTGATTGTTCTACACATCCTATGGGTACCGGAGATTC