Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0422500-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:15281320:15285893:1 gene:Os09g0422500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BRITTLE CULM 6 description:Cellulose synthase A catalytic subunit 9, Cell wall biosynthesis and plant growth (Os09t0422500-01)
Sequence	ATGGAGGCGAGCGCCGGGCTGGTGGCCGGGTCGCACAACCGGAACGAGCTGGTGCTGATC CGGGGGCACGAGGAGCCCAAGCCGCTGCGGGCGCTGAGCGGGCAGGTGTGCGAGATATGC GGCGACGAGGTCGGCCGCACCGTCGACGGCGACCTCTTCGTCGCCTGCAACGAGTGCGGC TTCCCGGTGTGCCGCCCCTGCTACGAGTACGAGCGCCGCGAGGGCACCCAGAACTGCCCC CAGTGCAAGACCCGCTACAAGCGCCTCAAGGGGAGCCCGAGGGTGCCCGGGGACGAGGAC GAGGAGGACATTGACGACCTGGAGCACGAGTTCAACATCGACGACGAGAAGCAGAAGCAG CTGCAGCAGGATCAGGATGGCATGCAGAACAGCCACATCACCGAGGCGATGCTGCACGGC AAGATGAGCTACGGGAGGGGCCCCGACGACGGCGACGGCAACAGCACCCCGCTCCCGCCG ATCATCACCGGCGCTCGCTCCGTCCCGGTGAGCGGGGAGTTCCCGATATCGAACAGCCAT GGCCATGGCGAGTTCTCCTCTTCCCTGCACAAGCGCATCCACCCCTACCCGGTGTCTGAG CCAGGGAGTGCAAAGTGGGACGAGAAGAAAGAGGTGAGCTGGAAGGAGAGGATGGACGAC TGGAAATCCAAGCAGGGCATCGTCGCCGGCGGCGCCCCCGATCCCGACGACTACGACGCC GACGTCCCACTGAACGACGAGGCGAGGCAGCCGCTGTCGAGGAAGGTGTCGATCGCGTCG AGCAAGGTGAACCCGTACCGGATGGTGATCATCCTCCGTCTCGTGGTGCTCGGCTTCTTC CTCCGGTACCGCATCCTCCACCCGGTGCCCGACGCCATCCCGCTGTGGCTCACCTCCATC ATCTGCGAGATCTGGTTCGCCGTGTCGTGGATCCTCGACCAGTTCCCCAAGTGGTACCCG ATCGACAGGGAGACCTACCTCGACCGCCTCTCCCTCCGCTACGAGCGCGAGGGGGAGCCG TCGCTGCTGTCGGCGGTGGACCTGTTCGTCAGCACGGTGGATCCGCTCAAGGAGCCGCCG CTGGTCACGGCCAACACCGTGCTGTCCATCCTCGCCGTCGACTACCCCGTCGACAAGGTG TCCTGCTACGTCTCCGACGACGGCGCGTCCATGCTCACGTTCGAGTCGCTGTCGGAGACG GCGGAGTTCGCCCGCAAGTGGGTGCCATTCTGCAAGAAGTTCAGCATCGAGCCCCGCGCC CCGGAGTTCTACTTCTCCCAGAAGGTCGACTACCTCAAGGACAAGGTCCATCCCAACTTC GTCCAGGAGCGCCGCGCCATGAAGAGAGAGTACGAGGAGTTCAAGGTGAGGATCAACGCG CTGGTGGCGAAGGCGCAGAAGGTGCCGGCGGAAGGGTGGATCATGAAGGACGGGACGCCA TGGCCGGGGAACAACACCCGCGACCACCCGGGCATGATCCAGGTGTTCCTCGGCCACAGC GGCGGCCACGACACCGAGGGCAACGAGCTCCCCCGCCTCGTCTACGTCTCCCGTGAGAAG CGCCCCGGCTTCCAGCACCACAAGAAGGCCGGCGCCATGAACGCCCTCATTCGTGTGTCG GCCGTGCTGACGAACGCGCCGTTCATGCTCAACTTGGATTGCGATCACTACATCAACAAC AGCAAGGCCATCAGGGAGGCGATGTGCTTCCTCATGGATCCGCAGGTCGGACGGAAGGTT TGCTACGTGCAGTTCCCGCAGAGGTTCGACGGCATCGACGTCCACGACCGATACGCCAAC CGCAACACCGTCTTCTTCGACATCAACATGAAGGGGCTTGATGGGATCCAGGGCCCGGTG TACGTCGGGACAGGGTGCGTGTTCAGGCGGCAGGCGCTGTACGGATACAACCCACCCAAG GGACCCAAGAGGCCCAAGATGGTGACCTGCGACTGCTGCCCTTGCTTCGGGAGGAAGAAG CGGAAGCACGGCAAGGACGGCCTCCCGGAGGCCGTCGCCGCCGACGGCGGGATGGACAGC GACAAGGAGATGCTCATGTCGCAGATGAACTTCGAGAAGCGGTTCGGGCAGTCGGCGGCG TTCGTGACGTCGACGCTGATGGAGGAAGGCGGCGTCCCGCCGTCGTCCAGCCCCGCCGCG CTCCTCAAGGAGGCCATCCATGTCATCAGCTGCGGCTACGAGGACAAGACCGACTGGGGT CTCGAGCTGGGGTGGATCTACGGGTCGATCACGGAGGACATCCTAACGGGGTTCAAGATG CACTGCCGCGGGTGGAGGTCGGTGTACTGCATGCCGAAGAGGGCGGCGTTCAAGGGGTCA GCGCCGATCAACCTATCTGACCGTCTCAACCAGGTGCTCCGGTGGGCGCTCGGCTCCGTC GAGATCTTCTTCAGCCGGCACAGCCCGCTCCTCTACGGCTACAAGAACGGCAACCTCAAG TGGCTCGAGCGCTTCTCCTACATCAACACCACCATCTACCCCTTCACTTCTCTCCCCCTC CTCGCCTACTGCACCCTACCCGCCGTCTGCCTCCTCACCGGCAAGTTCATCATGCCTCCG ATTAGCACGTTTGCGAGTTTGTTCTTCATCGCGCTCTTCATCTCCATCTTCGCGACGGGC ATCCTGGAGATGAGGTGGAGCGGGGTGAGCATCGAGGAGTGGTGGAGGAACGAGCAGTTC TGGGTCATCGGCGGCGTGTCGGCGCACCTGTTCGCGGTGGTGCAGGGCCTGCTCAAGGTG CTGGCCGGGATCGACACCAACTTCACCGTCACGTCCAAGGCCACCGGAGACGAGGACGAC GAGTTCGCGGAGCTCTACGCCTTCAAGTGGACCACCCTCCTCATCCCGCCCACCACGCTG CTCATCCTCAACATCATCGGCGTCGTCGCCGGCGTCTCCGACGCCATCAACAACGGCTCC GAGGCGTGGGGCCCGCTCTTCGGGAAGCTCTTCTTCGCCTTCTGGGTCATCGTCCACCTC TACCCCTTCCTCAAGGGGCTCATGGGGAGGCAGAACCGGACGCCCACCATTGTTGTCATC TGGTCCGTGCTGCTCGCCTCCATCTTTTCCTTGCTCTGGGTCAGGATTGATCCCTTCACC ATCAAGGCCAGGGGCCCTGACGTCAGGCAGTGCGGCATCAACTGCTGA

Peptide Sequence

PEP ID	Os09t0422500-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:15281320:15285893:1 gene:Os09g0422500 transcript:Os09t0422500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BRITTLE CULM 6 description:Cellulose synthase A catalytic subunit 9, Cell wall biosynthesis and plant growth (Os09t0422500-01)
Sequence	MEASAGLVAGSHNRNELVLIRGHEEPKPLRALSGQVCEICGDEVGRTVDGDLFVACNECG FPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVPGDEDEEDIDDLEHEFNIDDEKQKQ LQQDQDGMQNSHITEAMLHGKMSYGRGPDDGDGNSTPLPPIITGARSVPVSGEFPISNSH GHGEFSSSLHKRIHPYPVSEPGSAKWDEKKEVSWKERMDDWKSKQGIVAGGAPDPDDYDA DVPLNDEARQPLSRKVSIASSKVNPYRMVIILRLVVLGFFLRYRILHPVPDAIPLWLTSI ICEIWFAVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPP LVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRA PEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINALVAKAQKVPAEGWIMKDGTP WPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVS AVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQVGRKVCYVQFPQRFDGIDVHDRYAN RNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVTCDCCPCFGRKK RKHGKDGLPEAVAADGGMDSDKEMLMSQMNFEKRFGQSAAFVTSTLMEEGGVPPSSSPAA LLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSVYCMPKRAAFKGS APINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPL LAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQF WVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTL LILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVI WSVLLASIFSLLWVRIDPFTIKARGPDVRQCGINC

Transcript Sequence

Transcript ID	Os09t0422500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:15281320:15285893:1 gene:Os09g0422500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BRITTLE CULM 6 description:Cellulose synthase A catalytic subunit 9, Cell wall biosynthesis and plant growth (Os09t0422500-01)
Sequence	AGCGATCGATCGCCCTTCCTCCTCCTCCTCTCCTCCTTCCTGCGTCGCCTCCCTGATCAG CCGCAGCTCGTTGCCGGCCGTTGTTGCGCGGCCATGGAGGCGAGCGCCGGGCTGGTGGCC GGGTCGCACAACCGGAACGAGCTGGTGCTGATCCGGGGGCACGAGGAGCCCAAGCCGCTG CGGGCGCTGAGCGGGCAGGTGTGCGAGATATGCGGCGACGAGGTCGGCCGCACCGTCGAC GGCGACCTCTTCGTCGCCTGCAACGAGTGCGGCTTCCCGGTGTGCCGCCCCTGCTACGAG TACGAGCGCCGCGAGGGCACCCAGAACTGCCCCCAGTGCAAGACCCGCTACAAGCGCCTC AAGGGGAGCCCGAGGGTGCCCGGGGACGAGGACGAGGAGGACATTGACGACCTGGAGCAC GAGTTCAACATCGACGACGAGAAGCAGAAGCAGCTGCAGCAGGATCAGGATGGCATGCAG AACAGCCACATCACCGAGGCGATGCTGCACGGCAAGATGAGCTACGGGAGGGGCCCCGAC GACGGCGACGGCAACAGCACCCCGCTCCCGCCGATCATCACCGGCGCTCGCTCCGTCCCG GTGAGCGGGGAGTTCCCGATATCGAACAGCCATGGCCATGGCGAGTTCTCCTCTTCCCTG CACAAGCGCATCCACCCCTACCCGGTGTCTGAGCCAGGGAGTGCAAAGTGGGACGAGAAG AAAGAGGTGAGCTGGAAGGAGAGGATGGACGACTGGAAATCCAAGCAGGGCATCGTCGCC GGCGGCGCCCCCGATCCCGACGACTACGACGCCGACGTCCCACTGAACGACGAGGCGAGG CAGCCGCTGTCGAGGAAGGTGTCGATCGCGTCGAGCAAGGTGAACCCGTACCGGATGGTG ATCATCCTCCGTCTCGTGGTGCTCGGCTTCTTCCTCCGGTACCGCATCCTCCACCCGGTG CCCGACGCCATCCCGCTGTGGCTCACCTCCATCATCTGCGAGATCTGGTTCGCCGTGTCG TGGATCCTCGACCAGTTCCCCAAGTGGTACCCGATCGACAGGGAGACCTACCTCGACCGC CTCTCCCTCCGCTACGAGCGCGAGGGGGAGCCGTCGCTGCTGTCGGCGGTGGACCTGTTC GTCAGCACGGTGGATCCGCTCAAGGAGCCGCCGCTGGTCACGGCCAACACCGTGCTGTCC ATCCTCGCCGTCGACTACCCCGTCGACAAGGTGTCCTGCTACGTCTCCGACGACGGCGCG TCCATGCTCACGTTCGAGTCGCTGTCGGAGACGGCGGAGTTCGCCCGCAAGTGGGTGCCA TTCTGCAAGAAGTTCAGCATCGAGCCCCGCGCCCCGGAGTTCTACTTCTCCCAGAAGGTC GACTACCTCAAGGACAAGGTCCATCCCAACTTCGTCCAGGAGCGCCGCGCCATGAAGAGA GAGTACGAGGAGTTCAAGGTGAGGATCAACGCGCTGGTGGCGAAGGCGCAGAAGGTGCCG GCGGAAGGGTGGATCATGAAGGACGGGACGCCATGGCCGGGGAACAACACCCGCGACCAC CCGGGCATGATCCAGGTGTTCCTCGGCCACAGCGGCGGCCACGACACCGAGGGCAACGAG CTCCCCCGCCTCGTCTACGTCTCCCGTGAGAAGCGCCCCGGCTTCCAGCACCACAAGAAG GCCGGCGCCATGAACGCCCTCATTCGTGTGTCGGCCGTGCTGACGAACGCGCCGTTCATG CTCAACTTGGATTGCGATCACTACATCAACAACAGCAAGGCCATCAGGGAGGCGATGTGC TTCCTCATGGATCCGCAGGTCGGACGGAAGGTTTGCTACGTGCAGTTCCCGCAGAGGTTC GACGGCATCGACGTCCACGACCGATACGCCAACCGCAACACCGTCTTCTTCGACATCAAC ATGAAGGGGCTTGATGGGATCCAGGGCCCGGTGTACGTCGGGACAGGGTGCGTGTTCAGG CGGCAGGCGCTGTACGGATACAACCCACCCAAGGGACCCAAGAGGCCCAAGATGGTGACC TGCGACTGCTGCCCTTGCTTCGGGAGGAAGAAGCGGAAGCACGGCAAGGACGGCCTCCCG GAGGCCGTCGCCGCCGACGGCGGGATGGACAGCGACAAGGAGATGCTCATGTCGCAGATG AACTTCGAGAAGCGGTTCGGGCAGTCGGCGGCGTTCGTGACGTCGACGCTGATGGAGGAA GGCGGCGTCCCGCCGTCGTCCAGCCCCGCCGCGCTCCTCAAGGAGGCCATCCATGTCATC AGCTGCGGCTACGAGGACAAGACCGACTGGGGTCTCGAGCTGGGGTGGATCTACGGGTCG ATCACGGAGGACATCCTAACGGGGTTCAAGATGCACTGCCGCGGGTGGAGGTCGGTGTAC TGCATGCCGAAGAGGGCGGCGTTCAAGGGGTCAGCGCCGATCAACCTATCTGACCGTCTC AACCAGGTGCTCCGGTGGGCGCTCGGCTCCGTCGAGATCTTCTTCAGCCGGCACAGCCCG CTCCTCTACGGCTACAAGAACGGCAACCTCAAGTGGCTCGAGCGCTTCTCCTACATCAAC ACCACCATCTACCCCTTCACTTCTCTCCCCCTCCTCGCCTACTGCACCCTACCCGCCGTC TGCCTCCTCACCGGCAAGTTCATCATGCCTCCGATTAGCACGTTTGCGAGTTTGTTCTTC ATCGCGCTCTTCATCTCCATCTTCGCGACGGGCATCCTGGAGATGAGGTGGAGCGGGGTG AGCATCGAGGAGTGGTGGAGGAACGAGCAGTTCTGGGTCATCGGCGGCGTGTCGGCGCAC CTGTTCGCGGTGGTGCAGGGCCTGCTCAAGGTGCTGGCCGGGATCGACACCAACTTCACC GTCACGTCCAAGGCCACCGGAGACGAGGACGACGAGTTCGCGGAGCTCTACGCCTTCAAG TGGACCACCCTCCTCATCCCGCCCACCACGCTGCTCATCCTCAACATCATCGGCGTCGTC GCCGGCGTCTCCGACGCCATCAACAACGGCTCCGAGGCGTGGGGCCCGCTCTTCGGGAAG CTCTTCTTCGCCTTCTGGGTCATCGTCCACCTCTACCCCTTCCTCAAGGGGCTCATGGGG AGGCAGAACCGGACGCCCACCATTGTTGTCATCTGGTCCGTGCTGCTCGCCTCCATCTTT TCCTTGCTCTGGGTCAGGATTGATCCCTTCACCATCAAGGCCAGGGGCCCTGACGTCAGG CAGTGCGGCATCAACTGCTGAGAGAGGGCGTCAGCGATTTCTGAAGATTTGTGCATAGGG GGGCAGCAAGAAGATCGATTTGTAAAAGTTTTGTATTGCTCGTGTTGAGTTCGTGCTATG TTCTTCTGTAATATTTTGGGACCCAGAAATGGTTTAAACTTTTGAAGAGGGAATGGACAG ATGGCCATATTTGAATGTTAAGCAACAAGGGCTGGTATTCTCACTCCATGTTTGTTAGAT TTTTTGCAGCTGTGTTCTCATTGCTCCTACTAGGGATATATGGGTAATTTGGACCAAACC ATGGGCATTAATGTAGCTTAAAAGTATATGAATCGATTTGGTCAAGGGCTGAAGTAATAT TCCTACAAGGAATATATTCAGATTGCAGC