Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0421700-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:15240448:15242482:-1 gene:Os09g0421700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os09t0421700-01)
Sequence

ATGGACTTCGCCGACGCTCCGTCGCACGGAGACTCGCTGGTGGTGGTGAGGGACGCGCTG
CTGTCGCAGCTCCAGCAGGATCGCCTCCGGAAGGACATCATCGTCGCCGAGCTCGCCAAG
ATAGAGCGCGCCATGGCTCTGCGCGATGTCTCGCAGTCGCCGACGCCCCGGCACGCCGCC
GCCGCCGCCGCCGCCGGAAAGACTATTACAACTGTGGCTACACCGGCCAAGAAACCATCG
CCTTCAGAGAAATCTGAACCGGCAGTTCAGAAGTCGATGCCACCCTCGGCATGGAGCTGC
GCCGTGTGCCAGGTTCGAACAACCAGCGAGCGCAACCTACGTGATCACTGCGGAGGTCAG
AAGCACCAGTCCAAAGTCGCAGCACTGGAGAAGACAACCAAGGCCATGGCGAGAACGACG
GCGAAACCTTCTCCCGGTGCAGCAGCAAGATGGGGCTGCAGCATCTGCAACATCAGCTGC
AACGGCGAGTGCGATTTCGATACCCACCTGAAGGGGAAGAAGCATCAAGCGAACACCCAG
GCCTTACTGGAACAAAACAAGAAGAGCTCAGTGAATCCAGAGTCACAGGGAACCAAGGCG
GCGGCAGCAACACTGATCTGCAGAGTTTGCCAAGCTAAGTTCACCTGTCAGTCAGACTTG
CAGAGCCATCTCAAGGTCATGAAGCACCAGCTGAATCTCCGGGCACCATCTTCAGATGGC
TCTAGCTTCACCAGTGCAACCTCGGAGAGTTTGAGTTTGGAATTGTATTCTTGCAAGGTT
TGCAGCGTGAAGTGCACCTTCGAGAGGATGCTCGCGTACCATCTCACTGGGAAGAAGCAC
CTGAAACAGGAGAATTTGCAGTTGTCCTGCGAGATCTGCAAACTGCAGTGCAACAGCGAG
AAAGTGCTCTCTGACCATCGTTATGGGAAGAAGCACCAGGCGAAGCTCGAGAAAGTGCTT
CAGGCAAAGCTCAATGCGACGGAATGA

Peptide Sequence

PEP ID

Os09t0421700-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:15240448:15242482:-1 gene:Os09g0421700 transcript:Os09t0421700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os09t0421700-01)
Sequence

MDFADAPSHGDSLVVVRDALLSQLQQDRLRKDIIVAELAKIERAMALRDVSQSPTPRHAA
AAAAAGKTITTVATPAKKPSPSEKSEPAVQKSMPPSAWSCAVCQVRTTSERNLRDHCGGQ
KHQSKVAALEKTTKAMARTTAKPSPGAAARWGCSICNISCNGECDFDTHLKGKKHQANTQ
ALLEQNKKSSVNPESQGTKAAAATLICRVCQAKFTCQSDLQSHLKVMKHQLNLRAPSSDG
SSFTSATSESLSLELYSCKVCSVKCTFERMLAYHLTGKKHLKQENLQLSCEICKLQCNSE
KVLSDHRYGKKHQAKLEKVLQAKLNATE

Transcript Sequence

Transcript ID

Os09t0421700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:15240448:15242482:-1 gene:Os09g0421700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os09t0421700-01)
Sequence

CTGCGCTCTGCTTTTTCTCTGCTCTTCTCGATTTCTCCGGTGCACCGCTCCTCTGATCGG
CCGATGGACTTCGCCGACGCTCCGTCGCACGGAGACTCGCTGGTGGTGGTGAGGGACGCG
CTGCTGTCGCAGCTCCAGCAGGATCGCCTCCGGAAGGACATCATCGTCGCCGAGCTCGCC
AAGATAGAGCGCGCCATGGCTCTGCGCGATGTCTCGCAGTCGCCGACGCCCCGGCACGCC
GCCGCCGCCGCCGCCGCCGGAAAGACTATTACAACTGTGGCTACACCGGCCAAGAAACCA
TCGCCTTCAGAGAAATCTGAACCGGCAGTTCAGAAGTCGATGCCACCCTCGGCATGGAGC
TGCGCCGTGTGCCAGGTTCGAACAACCAGCGAGCGCAACCTACGTGATCACTGCGGAGGT
CAGAAGCACCAGTCCAAAGTCGCAGCACTGGAGAAGACAACCAAGGCCATGGCGAGAACG
ACGGCGAAACCTTCTCCCGGTGCAGCAGCAAGATGGGGCTGCAGCATCTGCAACATCAGC
TGCAACGGCGAGTGCGATTTCGATACCCACCTGAAGGGGAAGAAGCATCAAGCGAACACC
CAGGCCTTACTGGAACAAAACAAGAAGAGCTCAGTGAATCCAGAGTCACAGGGAACCAAG
GCGGCGGCAGCAACACTGATCTGCAGAGTTTGCCAAGCTAAGTTCACCTGTCAGTCAGAC
TTGCAGAGCCATCTCAAGGTCATGAAGCACCAGCTGAATCTCCGGGCACCATCTTCAGAT
GGCTCTAGCTTCACCAGTGCAACCTCGGAGAGTTTGAGTTTGGAATTGTATTCTTGCAAG
GTTTGCAGCGTGAAGTGCACCTTCGAGAGGATGCTCGCGTACCATCTCACTGGGAAGAAG
CACCTGAAACAGGAGAATTTGCAGTTGTCCTGCGAGATCTGCAAACTGCAGTGCAACAGC
GAGAAAGTGCTCTCTGACCATCGTTATGGGAAGAAGCACCAGGCGAAGCTCGAGAAAGTG
CTTCAGGCAAAGCTCAATGCGACGGAATGAGATGCGTCTGATTCTGATTAAAGATGCTGG
CGTTTTGACTTTTGAGCAACGAACATTTAAATTATCGACGGCACTGTATGATTATTTCAG
ATTATTAATCCTTGATTTTGGGACTTACTGCTGCTGCTTCTTTTCAATTGCTTCTATATA
CTAGTACAAAAATAATCTATACGGTTTAAAATGCCACT