Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0420900-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:15163139:15168798:-1 gene:Os09g0420900 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os09t0420900-01)
Sequence	ATGAAGTTCATGAAGCTGGGCTCCAAGCCCGACGCCTTCCAGTCCGACGGCGCCGACGTC AGATATGTGATCTCAGACCTCGCAACAGATGTCATTGTGCATGTCAGCGAAGTCAAATTT TACTTACATAAGTTTCCCCTTCTGTCCAAGAGCAGCAAGCTTCAGAGGTTAGTTATTAAG GCCACCGAGGAGGGGACTGATGAGGTCCACATAGATGGCTTTCCTGGAGGAGTGACAGCG TTCGAAATATGCGCTAAGTTCTGCTATGGGATGGTTGTTACCCTCAGTCCTCACAATGTT GTTGCAGCAAGATGTGCAGCAGAGTACCTTGAAATGACTGAAGATGTGGACAAGGGAAAC TTGATATTCAAAATCGATGTCTTCATAAATTCTAGCATCCTCCGTAGCTGGAAAGACTCT ATCATTGTTCTCCAGAGCACAAAAGCACTATTACCTTGGTCCGAAGAGCTGAAGGTCATC GGCAGATGTATAGATGCTATTGCTTCAAAGACATCTGTGGATCCAGCTAATGTAACCTGG TCATACAGTCACAGCAGGAAAGGAATGAGCTGTACTGAAATAGTTGAATCAACAGGAAGA ACATCAATAGCTCCTAAAGACTGGTGGGTTGAGGACTTATGCGAGCTCGATGTTGACCTC TACAAGAGAGTGATGGTTGCTGTCAAATCCAAGGGGAGAATGTCACCTGAATTGATAGGG GAAGCCCTTAAAGCATATGCTGTCAGATGGCTGCCAGATTCTTATGATGCTTTGGTCGCG GAGGATTACATGAGAAGGAACCAATGTTTGGTCGAGACTATAATATGGTTATTGCCGTCA GATAAGACATCAGGTTGTTCTTGCAGGTTTCTCTTGAAACTGTTGAAAGTTGCTATATTG GTTGGAGCTGGGCAACATGTGAAGGAAGAACTTATGAGAAGGATTAGTTTCCAGTTGCAC AAAGCTTCGGTTAAGGATCTCTTACTACCTGCTGCTTCACCCAGTGATGGCGCACACGAT GTTAAGTTAGTCCATAATCTTGTGCAGAGATTTGTTGCAAGAACAGCGATGTCCCACAAT GGTGGTTTTGTTGAGAAATCTGATGACAAAATGATTGAGCTTAACTTTGAACAAGAATCC ACTTTGGCTTTAGGAGAGCTGGTTGATGGCTATCTATCTGAAGTAGCTTCAGATCCAGAC CTTTCATTGTCTACATTTGTTGAACTAGCAACAGCGGTTCCAGAAGCAGCTAGGCCTGTT CATGACAGCTTGTACTCAGCTGTTGATGCATATCTCAAGGAGCATCCAAACATAAGTAAA GCCGACAAGAAGAAGATCTGCGGTCTGATAGATGTCAAGAAGCTTTCAACAGATGCAAGC ATGCACGCCACGCAAAACGACCGCCTACCGCTCCGGTTGGTGGTGCAGGTCCTCTTCTTC CAACAGCTGAGGGCGGGTTCCAGCAATGCGCTTGCTCTAACGGATGGTGGAGGACACACG TGCGCAAAGCCTATTATGAAGGATCAGAGTGACATTTGCGAAAGACGGATACCAAGGCAT CCAAACTCGCTGAACAAGCAAGCGACCAGCCTAAGCGCGAGAGAGGTCGAGCACCGGAAG AGCGAGCACAGGGGAGGAGGCAGGAACAGCTTCAAGGACCAGCTTGGCGGCTTCCTTCTG CAGTCAAGGTCCAGGAGGATCTTTGACAAGATATGGAGCAGCAAGGGGCAGGGAGAGAAT GGCAAAGGTTCAGAGACGTCAGGTAGCTCACAGAGCCCGCCATTGTCGGCTAAGCCTGCA GATGTGAAGCCCTCTCCCCTCCCACCTCTTAGGAACAGGAGATATTCTGTTTCATAG

Peptide Sequence

PEP ID	Os09t0420900-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:15163139:15168798:-1 gene:Os09g0420900 transcript:Os09t0420900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os09t0420900-01)
Sequence	MKFMKLGSKPDAFQSDGADVRYVISDLATDVIVHVSEVKFYLHKFPLLSKSSKLQRLVIK ATEEGTDEVHIDGFPGGVTAFEICAKFCYGMVVTLSPHNVVAARCAAEYLEMTEDVDKGN LIFKIDVFINSSILRSWKDSIIVLQSTKALLPWSEELKVIGRCIDAIASKTSVDPANVTW SYSHSRKGMSCTEIVESTGRTSIAPKDWWVEDLCELDVDLYKRVMVAVKSKGRMSPELIG EALKAYAVRWLPDSYDALVAEDYMRRNQCLVETIIWLLPSDKTSGCSCRFLLKLLKVAIL VGAGQHVKEELMRRISFQLHKASVKDLLLPAASPSDGAHDVKLVHNLVQRFVARTAMSHN GGFVEKSDDKMIELNFEQESTLALGELVDGYLSEVASDPDLSLSTFVELATAVPEAARPV HDSLYSAVDAYLKEHPNISKADKKKICGLIDVKKLSTDASMHATQNDRLPLRLVVQVLFF QQLRAGSSNALALTDGGGHTCAKPIMKDQSDICERRIPRHPNSLNKQATSLSAREVEHRK SEHRGGGRNSFKDQLGGFLLQSRSRRIFDKIWSSKGQGENGKGSETSGSSQSPPLSAKPA DVKPSPLPPLRNRRYSVS

Transcript Sequence

Transcript ID	Os09t0420900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:15163139:15168798:-1 gene:Os09g0420900 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os09t0420900-01)
Sequence	AGAGGAGAGAGAAAGAGGAGTGAGAGGAGTTAATAATATCCCATCATTCACACTCCACGG CATCATTGGCAACTCCTCTCTTCCATTCCATTCAACCACATCTGTTTCTTTAATTGCTGC GTTTAATCACTCTCCTCCTCACCAACCGCTTCGTTCTCCGTTGGTGTATAGTTGCCGCAG CAGCAGCAGCACTCGCCACTGTTCTTTCTTTCTCTCTTTCTCCTCCTGCTGCTGCGTTGC TTTCTTCAGGCAGCTAGCTCAGCTGCTTGTGCGTGCATGGGAAGGAGTAGGAGGAGGAGG CTCTGAGAGGGAGGGAGGAGGAGGAAGAAGAAGAAGAAGATGAAGTTCATGAAGCTGGGC TCCAAGCCCGACGCCTTCCAGTCCGACGGCGCCGACGTCAGATATGTGATCTCAGACCTC GCAACAGATGTCATTGTGCATGTCAGCGAAGTCAAATTTTACTTACATAAGTTTCCCCTT CTGTCCAAGAGCAGCAAGCTTCAGAGGTTAGTTATTAAGGCCACCGAGGAGGGGACTGAT GAGGTCCACATAGATGGCTTTCCTGGAGGAGTGACAGCGTTCGAAATATGCGCTAAGTTC TGCTATGGGATGGTTGTTACCCTCAGTCCTCACAATGTTGTTGCAGCAAGATGTGCAGCA GAGTACCTTGAAATGACTGAAGATGTGGACAAGGGAAACTTGATATTCAAAATCGATGTC TTCATAAATTCTAGCATCCTCCGTAGCTGGAAAGACTCTATCATTGTTCTCCAGAGCACA AAAGCACTATTACCTTGGTCCGAAGAGCTGAAGGTCATCGGCAGATGTATAGATGCTATT GCTTCAAAGACATCTGTGGATCCAGCTAATGTAACCTGGTCATACAGTCACAGCAGGAAA GGAATGAGCTGTACTGAAATAGTTGAATCAACAGGAAGAACATCAATAGCTCCTAAAGAC TGGTGGGTTGAGGACTTATGCGAGCTCGATGTTGACCTCTACAAGAGAGTGATGGTTGCT GTCAAATCCAAGGGGAGAATGTCACCTGAATTGATAGGGGAAGCCCTTAAAGCATATGCT GTCAGATGGCTGCCAGATTCTTATGATGCTTTGGTCGCGGAGGATTACATGAGAAGGAAC CAATGTTTGGTCGAGACTATAATATGGTTATTGCCGTCAGATAAGACATCAGGTTGTTCT TGCAGGTTTCTCTTGAAACTGTTGAAAGTTGCTATATTGGTTGGAGCTGGGCAACATGTG AAGGAAGAACTTATGAGAAGGATTAGTTTCCAGTTGCACAAAGCTTCGGTTAAGGATCTC TTACTACCTGCTGCTTCACCCAGTGATGGCGCACACGATGTTAAGTTAGTCCATAATCTT GTGCAGAGATTTGTTGCAAGAACAGCGATGTCCCACAATGGTGGTTTTGTTGAGAAATCT GATGACAAAATGATTGAGCTTAACTTTGAACAAGAATCCACTTTGGCTTTAGGAGAGCTG GTTGATGGCTATCTATCTGAAGTAGCTTCAGATCCAGACCTTTCATTGTCTACATTTGTT GAACTAGCAACAGCGGTTCCAGAAGCAGCTAGGCCTGTTCATGACAGCTTGTACTCAGCT GTTGATGCATATCTCAAGGAGCATCCAAACATAAGTAAAGCCGACAAGAAGAAGATCTGC GGTCTGATAGATGTCAAGAAGCTTTCAACAGATGCAAGCATGCACGCCACGCAAAACGAC CGCCTACCGCTCCGGTTGGTGGTGCAGGTCCTCTTCTTCCAACAGCTGAGGGCGGGTTCC AGCAATGCGCTTGCTCTAACGGATGGTGGAGGACACACGTGCGCAAAGCCTATTATGAAG GATCAGAGTGACATTTGCGAAAGACGGATACCAAGGCATCCAAACTCGCTGAACAAGCAA GCGACCAGCCTAAGCGCGAGAGAGGTCGAGCACCGGAAGAGCGAGCACAGGGGAGGAGGC AGGAACAGCTTCAAGGACCAGCTTGGCGGCTTCCTTCTGCAGTCAAGGTCCAGGAGGATC TTTGACAAGATATGGAGCAGCAAGGGGCAGGGAGAGAATGGCAAAGGTTCAGAGACGTCA GGTAGCTCACAGAGCCCGCCATTGTCGGCTAAGCCTGCAGATGTGAAGCCCTCTCCCCTC CCACCTCTTAGGAACAGGAGATATTCTGTTTCATAGGGTTCTTGTTTACTTCTTTTAATT TAGCTCTGGGTTAGGTTGTACAGAAAAGATAAGTTGATCAGCTGGCTGCACATCATTTTT GGTTTGATCCTTGCTCAGATCAGTGAAGAGAAAGGTGTGGGGGTAAGGGTGTAAGCACTA AGTACTAAGCACTTGTTCTACCTGCTGCTTTCTGTATGTTTATCAAGTTGTAGCTTACTA TAGTGTCATCTTGACTTGAGAGAGATTTGCTAGGGCCTTTTATTGGAAATGTCTATGAAC AAGAAGCGAAAAACTAATGAAAAGGGTTCATGAGGTTGGTGTTT