Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0413600-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:14694461:14699068:-1 gene:Os09g0413600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L34e domain containing protein. (Os09t0413600-01);Hypothetical conserved gene. (Os09t0413600-02)
Sequence	ATGGATGCCGGTGAGGGTGGCGGCGCGCCCGCCGCCGCCGCCGCCGTGTCGAATGGGTTT GTTCACGCCGTCGTGCGGTGGTGCTTCTCTCCGCTCTTCTTCTGGCTGTTCACCGTCGCT CTCGTCGCCGCCATCCACCTCGCCTCCACCTACATCTCTCCCTCCAGAGACGAAGAGGAC AAGGAGAAGAAGGCGCGGCGCGGCGGCGATTTCGCCGGAGCCGGGGAGGAGAGGGAGGAG GAGGAGGTGGGAAGGAACGACGACAAGATTCTGGAGATGATGCGGAGCTTCAGCTTCATG CATGCGAGCGAGGAGGATTTCATGGAGGGGATGGCTACGTACGACCACGTCGTCGCCAGG ATGGCGCCGGAGCCGCTGCCGCTGACGCCGCCGGCCGCGCCGCCGCCGTCGACGTTCAGC TTCAGGTTCCAGCACCAGTTGCCCGAGATTCTCCGGGAGACGGCCGTGGTCTCGGGTGAA ATACCTGTGCAAGTATTGGAAGAACACGAGCCGGAGAAGAAGCCGGCGATTGCGATGGAA TCGAAGCAAGAACGCGAGCGCGATGCAGAGGAGAGAGAGGTGGTCATGGAGGAGGAGGAA GAAGAGGAGCAGAGTAGAGAGGTCGTGGAGGCGGCGGCGGCGGCGCCGATGATCGTGTCG ACCACGCACAACTACCGGTTCTTGACGGAGCGTGACTTCCGAGGGTTCGTCAAGGAGCCG GAGGCCATCACGGTGCGCGTCCAGGAATCCTTCGTGCCATCGCCGGAGCTGGAGGCGGTG GCGGTGGCGGCAGCGGCGCAGCCGGAGGAGCGGCGAGTGGTCGACGGGGCGCCACGGCGC GGCTTCCTCACGACCAACGACTTCCGCCCGGCGAACGAGCCGGATAGCGCGCGCCAGAGC GTGGCGTCGCAGCTGGGGCGGAAGCCGGCGGCGAGCTCCCCGTCCGCCGCGTCGAGGGGC AGCGCCGCCGCCGCCGTGAGCGGGAGGACGAGCTTCGCGTCGGAGTTCTCCGGCTTCGGC GGCGACTCCGACTCGGAGTCAACCGCCAGCGACGGGTACTCGGTGAAGGACCTCGTCGTC GACTCCGACAGCGACTGGTTCCTCTCGGAGAAGGACTTCCCGGCGGCGGCGGTGGCCGGG CACGACGCCGGCAGCCTCAGGGGCTATTACAAGGCCAAGGTGCTCAAGGCCCTGGAAGCC CTCGACGCGTCGGCCTCCAACCTGGAACGTTCGTTCCAGGACTCGGCGACGACGGTGTCG CCGGGCTCGGTCGTCGGCCAGGCCTCGCCGGACATCATCGGCGCCGCCGACGACCCCGCC AAGTACCCCGAGGACATGTGGTCCCGGAGCCCCTCGCCGGACGTCGAGTACAACGAAGAC GAGCACAAGGGAAACGAGGCGACGAACATGGCGGAGGAGGTGAGCTTCGACATGAGCGAC GACGAGCGGCCGCCCGCCTCCGGCGGCAAGAAGACGACGGCGATGGCAGCATCATCATCA TCATCATCACCGGTGCACGACGCCGAATCTGAAGATGAGAACAGCTTGGATCATTCGGAG AAGGAAACCATCACGATACATGATCATTCGTACGAATCTGTCTCCGATGTCAAGAGGAGG AGCCCAGAAGCAATCTCTGACGCAGAATTGGATGATGCCTCGTCTCGCCATGCTGCTGTT CTTGATGCCAAGGTAAGAAGCCCGGACGTTCATTCATCTGAACCCATCTTTGACAATTAC GAAGAACATGAGGTCTCAAATGATCAATCACAAGCGGCAGTTTCTGATGAGAAGAGAAGC ACACCGCATTCGGAGAGAGAATTTGCTGGTACAGACGATCGCTCACACGAACTCATTTCT GATGTTTGGAAAGATATTGTCGGTGCAAATGATCAGTCATTAGCATCAGCTCACGATGAA GAAAGAAGTCCTGATCAATCGGTTGCGATTATTTCTGATGATCACAAAGCAATTGTCAGT GCTACGAATGATTCCTCAAATGGAGAAGTTTCTGATCATAAGAGCACCCCAGAGACTGCA GAGCAGGAATTCAGTGGAAATGATGATCCATATGAACTAGTTGCCGATGCAAGGATCATT TCAGAGCGTGCAGAAGAAGATGATATCCCAAATGAGCGTCCAGGGAACGCCACTCGGCAT GTCACCTTCTCCGTCGCCGAGAAGGGGAAGGTGTTGGACGTGGTGGAGGAGGATCAAGAG GACAAGTGGAAGGATTTGACGGAAGAGGAGGAGGACGAGCTGGAGTCACTGTGGGAGCAC CAGGATCTGATCGAGCAGCTGAAGCTGGAGCTGAAGAAGGTGCGGTCGATCGGGCTACCG ACGATCTTGGAGGAGTCGGAGACGCCGAAGGCACCGATGGAGGATCTCAAGCCATGGAGG ATCGACGCCAAGTTCCTTCGCGAGGACCCAATGGACGAGCTGAATAAGTTCTTCAAGAGT TATAGGGAGAGAATGAGGAAGTTTGACATATTGTGCTATCAGAAGATGTATGCAATAGAT TTTCTTCAGTTCAGAGGGCCTCAACAATCGGCAAATTCTCTAAAATCCTTATCACCAACG GTGACATCCATCCTGTCTCACAATTTCCGGTCGTCACGTCGAAAATCACCCGAGGACCCG TCAGAAAGGTTTCTCAAGGAGCTCCGGTATGACTTGGAGACAGTTTACGTCGGCCAAATG TGCCTATCATGGGAGTTCCTTCGGTGGCAGTATGAGCAGGCCCATGACCTGCCGGAATCC GATCCTTACCACAGCCATCAGTACAACCAGGTGGCAGGGGAATTCCAACAATTTCAGGTA GTTGTGCAGAGGTTTGTGGAGGATGAGTCCTTCAAGGGCCCTAGGTTGCCAAACTACATC AATAACCGATGTGTTCTTCGAAATCTCTTGCAAGTACCAGTAATAAAAGAGGACAGCTTG AAGGACAGGATGGAGGATCAGCGTAAGGGGAACTATGTCATAACGAGCGAGGAGCTGGAG GAGATCATGGAGGAATGCATGCGCGTCTTTTGGGAGTTCATCAGGTCCGACAGAGTCGAG ACGACGTCGGTGCTCAAGGGCTTGTCGAGCACTCATGTTGAGCTCCAGGACCCTTTAGAC CATGATCTTATGATGCACATCGACTCCACGTTACAGAAGAAAGAGAAGAGGCTGAAGGAT CTCCTGAGGACCGGCAACTGCATAGTGAAGAAGTTCAAGAAGCCCAAGGAGGACACCTTG AACCAGAGCCTCTTCTTCTCGCAGGTCGACATGCGGCTCGTGGCACGGGTCCTGCGGATG CCGAGGATCACCAGCGAGCAGCTGCAGTGGTGCAAGGCGAAGCTGGACAAGATCGCACTT GTAGATAGGAGGATCCACAGGGAGGCTTCATTTTTGTTGTTCCCCTGTTGA

Peptide Sequence

PEP ID	Os09t0413600-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:14694461:14699068:-1 gene:Os09g0413600 transcript:Os09t0413600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L34e domain containing protein. (Os09t0413600-01);Hypothetical conserved gene. (Os09t0413600-02)
Sequence	MDAGEGGGAPAAAAAVSNGFVHAVVRWCFSPLFFWLFTVALVAAIHLASTYISPSRDEED KEKKARRGGDFAGAGEEREEEEVGRNDDKILEMMRSFSFMHASEEDFMEGMATYDHVVAR MAPEPLPLTPPAAPPPSTFSFRFQHQLPEILRETAVVSGEIPVQVLEEHEPEKKPAIAME SKQERERDAEEREVVMEEEEEEEQSREVVEAAAAAPMIVSTTHNYRFLTERDFRGFVKEP EAITVRVQESFVPSPELEAVAVAAAAQPEERRVVDGAPRRGFLTTNDFRPANEPDSARQS VASQLGRKPAASSPSAASRGSAAAAVSGRTSFASEFSGFGGDSDSESTASDGYSVKDLVV DSDSDWFLSEKDFPAAAVAGHDAGSLRGYYKAKVLKALEALDASASNLERSFQDSATTVS PGSVVGQASPDIIGAADDPAKYPEDMWSRSPSPDVEYNEDEHKGNEATNMAEEVSFDMSD DERPPASGGKKTTAMAASSSSSSPVHDAESEDENSLDHSEKETITIHDHSYESVSDVKRR SPEAISDAELDDASSRHAAVLDAKVRSPDVHSSEPIFDNYEEHEVSNDQSQAAVSDEKRS TPHSEREFAGTDDRSHELISDVWKDIVGANDQSLASAHDEERSPDQSVAIISDDHKAIVS ATNDSSNGEVSDHKSTPETAEQEFSGNDDPYELVADARIISERAEEDDIPNERPGNATRH VTFSVAEKGKVLDVVEEDQEDKWKDLTEEEEDELESLWEHQDLIEQLKLELKKVRSIGLP TILEESETPKAPMEDLKPWRIDAKFLREDPMDELNKFFKSYRERMRKFDILCYQKMYAID FLQFRGPQQSANSLKSLSPTVTSILSHNFRSSRRKSPEDPSERFLKELRYDLETVYVGQM CLSWEFLRWQYEQAHDLPESDPYHSHQYNQVAGEFQQFQVVVQRFVEDESFKGPRLPNYI NNRCVLRNLLQVPVIKEDSLKDRMEDQRKGNYVITSEELEEIMEECMRVFWEFIRSDRVE TTSVLKGLSSTHVELQDPLDHDLMMHIDSTLQKKEKRLKDLLRTGNCIVKKFKKPKEDTL NQSLFFSQVDMRLVARVLRMPRITSEQLQWCKAKLDKIALVDRRIHREASFLLFPC

Transcript Sequence

Transcript ID	Os09t0413600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:14694461:14699068:-1 gene:Os09g0413600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L34e domain containing protein. (Os09t0413600-01);Hypothetical conserved gene. (Os09t0413600-02)
Sequence	TTTTTCTCCCGTCCTACCTTCATCCACACCTCGGATCGGTGGATCGACCGATCGATCGAC GGGTGGTGGCACGTTGTTTTCTTCTCCATCCATCCATCCATCCACTCGGTGGCTATGGCG TAGGGAGGAAAATCACGAAAAAGAGGATCACTCGGACGGATTCTTTTCTCTCTCTCTCTC TTTTCTTCTTCTTGTTCTACTTCTTTGATCTTCTTCTTCTCTGCTGCTCTGCCGTCCATG GTGGTATGGTGGTGATGTGGTGGCGTGCAAGGTGAGGTAAAGGGGGTGTGGTGGTGGTCG GCTCGGCTGTTTATCCATCCATCCATGGATGCCGGTGAGGGTGGCGGCGCGCCCGCCGCC GCCGCCGCCGTGTCGAATGGGTTTGTTCACGCCGTCGTGCGGTGGTGCTTCTCTCCGCTC TTCTTCTGGCTGTTCACCGTCGCTCTCGTCGCCGCCATCCACCTCGCCTCCACCTACATC TCTCCCTCCAGAGACGAAGAGGACAAGGAGAAGAAGGCGCGGCGCGGCGGCGATTTCGCC GGAGCCGGGGAGGAGAGGGAGGAGGAGGAGGTGGGAAGGAACGACGACAAGATTCTGGAG ATGATGCGGAGCTTCAGCTTCATGCATGCGAGCGAGGAGGATTTCATGGAGGGGATGGCT ACGTACGACCACGTCGTCGCCAGGATGGCGCCGGAGCCGCTGCCGCTGACGCCGCCGGCC GCGCCGCCGCCGTCGACGTTCAGCTTCAGGTTCCAGCACCAGTTGCCCGAGATTCTCCGG GAGACGGCCGTGGTCTCGGGTGAAATACCTGTGCAAGTATTGGAAGAACACGAGCCGGAG AAGAAGCCGGCGATTGCGATGGAATCGAAGCAAGAACGCGAGCGCGATGCAGAGGAGAGA GAGGTGGTCATGGAGGAGGAGGAAGAAGAGGAGCAGAGTAGAGAGGTCGTGGAGGCGGCG GCGGCGGCGCCGATGATCGTGTCGACCACGCACAACTACCGGTTCTTGACGGAGCGTGAC TTCCGAGGGTTCGTCAAGGAGCCGGAGGCCATCACGGTGCGCGTCCAGGAATCCTTCGTG CCATCGCCGGAGCTGGAGGCGGTGGCGGTGGCGGCAGCGGCGCAGCCGGAGGAGCGGCGA GTGGTCGACGGGGCGCCACGGCGCGGCTTCCTCACGACCAACGACTTCCGCCCGGCGAAC GAGCCGGATAGCGCGCGCCAGAGCGTGGCGTCGCAGCTGGGGCGGAAGCCGGCGGCGAGC TCCCCGTCCGCCGCGTCGAGGGGCAGCGCCGCCGCCGCCGTGAGCGGGAGGACGAGCTTC GCGTCGGAGTTCTCCGGCTTCGGCGGCGACTCCGACTCGGAGTCAACCGCCAGCGACGGG TACTCGGTGAAGGACCTCGTCGTCGACTCCGACAGCGACTGGTTCCTCTCGGAGAAGGAC TTCCCGGCGGCGGCGGTGGCCGGGCACGACGCCGGCAGCCTCAGGGGCTATTACAAGGCC AAGGTGCTCAAGGCCCTGGAAGCCCTCGACGCGTCGGCCTCCAACCTGGAACGTTCGTTC CAGGACTCGGCGACGACGGTGTCGCCGGGCTCGGTCGTCGGCCAGGCCTCGCCGGACATC ATCGGCGCCGCCGACGACCCCGCCAAGTACCCCGAGGACATGTGGTCCCGGAGCCCCTCG CCGGACGTCGAGTACAACGAAGACGAGCACAAGGGAAACGAGGCGACGAACATGGCGGAG GAGGTGAGCTTCGACATGAGCGACGACGAGCGGCCGCCCGCCTCCGGCGGCAAGAAGACG ACGGCGATGGCAGCATCATCATCATCATCATCACCGGTGCACGACGCCGAATCTGAAGAT GAGAACAGCTTGGATCATTCGGAGAAGGAAACCATCACGATACATGATCATTCGTACGAA TCTGTCTCCGATGTCAAGAGGAGGAGCCCAGAAGCAATCTCTGACGCAGAATTGGATGAT GCCTCGTCTCGCCATGCTGCTGTTCTTGATGCCAAGGTAAGAAGCCCGGACGTTCATTCA TCTGAACCCATCTTTGACAATTACGAAGAACATGAGGTCTCAAATGATCAATCACAAGCG GCAGTTTCTGATGAGAAGAGAAGCACACCGCATTCGGAGAGAGAATTTGCTGGTACAGAC GATCGCTCACACGAACTCATTTCTGATGTTTGGAAAGATATTGTCGGTGCAAATGATCAG TCATTAGCATCAGCTCACGATGAAGAAAGAAGTCCTGATCAATCGGTTGCGATTATTTCT GATGATCACAAAGCAATTGTCAGTGCTACGAATGATTCCTCAAATGGAGAAGTTTCTGAT CATAAGAGCACCCCAGAGACTGCAGAGCAGGAATTCAGTGGAAATGATGATCCATATGAA CTAGTTGCCGATGCAAGGATCATTTCAGAGCGTGCAGAAGAAGATGATATCCCAAATGAG CGTCCAGGGAACGCCACTCGGCATGTCACCTTCTCCGTCGCCGAGAAGGGGAAGGTGTTG GACGTGGTGGAGGAGGATCAAGAGGACAAGTGGAAGGATTTGACGGAAGAGGAGGAGGAC GAGCTGGAGTCACTGTGGGAGCACCAGGATCTGATCGAGCAGCTGAAGCTGGAGCTGAAG AAGGTGCGGTCGATCGGGCTACCGACGATCTTGGAGGAGTCGGAGACGCCGAAGGCACCG ATGGAGGATCTCAAGCCATGGAGGATCGACGCCAAGTTCCTTCGCGAGGACCCAATGGAC GAGCTGAATAAGTTCTTCAAGAGTTATAGGGAGAGAATGAGGAAGTTTGACATATTGTGC TATCAGAAGATGTATGCAATAGATTTTCTTCAGTTCAGAGGGCCTCAACAATCGGCAAAT TCTCTAAAATCCTTATCACCAACGGTGACATCCATCCTGTCTCACAATTTCCGGTCGTCA CGTCGAAAATCACCCGAGGACCCGTCAGAAAGGTTTCTCAAGGAGCTCCGGTATGACTTG GAGACAGTTTACGTCGGCCAAATGTGCCTATCATGGGAGTTCCTTCGGTGGCAGTATGAG CAGGCCCATGACCTGCCGGAATCCGATCCTTACCACAGCCATCAGTACAACCAGGTGGCA GGGGAATTCCAACAATTTCAGGTAGTTGTGCAGAGGTTTGTGGAGGATGAGTCCTTCAAG GGCCCTAGGTTGCCAAACTACATCAATAACCGATGTGTTCTTCGAAATCTCTTGCAAGTA CCAGTAATAAAAGAGGACAGCTTGAAGGACAGGATGGAGGATCAGCGTAAGGGGAACTAT GTCATAACGAGCGAGGAGCTGGAGGAGATCATGGAGGAATGCATGCGCGTCTTTTGGGAG TTCATCAGGTCCGACAGAGTCGAGACGACGTCGGTGCTCAAGGGCTTGTCGAGCACTCAT GTTGAGCTCCAGGACCCTTTAGACCATGATCTTATGATGCACATCGACTCCACGTTACAG AAGAAAGAGAAGAGGCTGAAGGATCTCCTGAGGACCGGCAACTGCATAGTGAAGAAGTTC AAGAAGCCCAAGGAGGACACCTTGAACCAGAGCCTCTTCTTCTCGCAGGTCGACATGCGG CTCGTGGCACGGGTCCTGCGGATGCCGAGGATCACCAGCGAGCAGCTGCAGTGGTGCAAG GCGAAGCTGGACAAGATCGCACTTGTAGATAGGAGGATCCACAGGGAGGCTTCATTTTTG TTGTTCCCCTGTTGAGAATACATATATAAATACACATGCTTCTTTTGTTCATTTTTCCCC CCTCCATAAATCATCTCCACCATGTAATCCACGGCTTGTAGATTTTTCTTAACCTTTTAG TAATCCAGGTCTCTTTACACATGTCCAGTAAATTACAAATTGTAACATGGTAAAACAGCT CATAAACCACAGAGTCCACACGGTACAGTACTTACAGTACCCTAGCTAGAAAATCAGAGT GTAATAAATCAGCATTTCCTCTCAAGAGGAAACATCTACCTCAGAATGCACAGATTTCTA CT