Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0413300-00
CDS Infomation	cds chromosome:IRGSP-1.0:9:14686187:14690226:-1 gene:Os09g0413300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PENTATRICOPEPTIDE REPEAT PROTEIN 1 description:Pentatricopeptide repeat domain containing protein. (Os09t0413300-00)
Sequence	ATGCCGCCTCGCCTCCTCCGGTCCTCCACCCCTCTCGCCGCCGCCCACCTTCGCGCGCTC TCCGCGTTCGCCCCGCGCGCTGGGGAGGGCGCGCCCCACCTGTTCGGCGGAATGCGGCCG CGGGCACCCGACCTCCTCGCGCGCCTCCCCGCCGAGCTCGCGTCATTCGCCCGCGCGCGC GCCGCGGGGCGCGCCGCGCCGAGCCAGTTCGCCTACGGCAACGCGCTCGCCGCGTGCGCC CGCGCCCCCGCCCCCGCGCTTGCCGAGCAGGTCTACTGCGCCGCATGGAAGGACGGGCTC TCCGGGAACGCGTACGTCTGCACCGGCATGGTCGACCTGCTCGCCAAGAGCGGCCGCCTC CGGGACGCGCTCAGGGTGTTCGCGGACGGGGACCCGAGCAGCGCCGTGTGCTGGAACGCG GCCGTCTCCGGGGCGGTGCGGAACGGCGAGGGCGGGCTCGCCGTCGAGATGTTCCGTGAT ATGGTGTGGGGCTCGTGCGAGCCCAACTCGTTCACTTACTCCGGGGCTCTCAGCGCGTGC GCGGCGGGTGAAGAGCTGAGCGTTGGGCGGGCGGTGCATGGTCTGGTGCTTCGGCGTGAT CCTGAGTACGATGTGTTCGTTGGAACGTCGCTTGTTAACATGTATGCGAAATGTGGTGAT ATGGGTGCTGCCATGAGGGAGTTCTGGAGAATGCCAGTCCGGAATGTGGTTTCGTGGACC ACCGCGATAGCCGGTTTCGTTCAGGATGATGAGCCAGTCAGTGCAATGCTGCTACTTAGG GAAATGGTGCGGAATGGCGTGGCGATCAACAAATACACAGCCACAAGTATCTTGCTTGCT TGCGCTCAGATGTCTATGGTAAGAGAGGCTAGCCAGATACATGGTATGGTTTTGAAGACA GAGATGTACTTGGATTGCGTTGTCAAGGAGGCATTGATTTCGACGTACACTAACTTTGGG TTTATTGAGTTGTCGGAGAAAGTGTTTGAAGAAGCTGGCACAGTAAGCAATAGAAGTATT TGGTCAGCCTTCATATCTGGGGTCAGTAACCATAGCCTTCTGAGATCAGTTCAGTTGTTA AGGAGGATGTTTCATCAAGGTCTAAGACCGAATGACAAATGCTATGCTTCTGTTTTCAGC TCTGTAAATTCAATTGAATTTGGTGGACAACTTCATTCATCAGCCATAAAAGAGGGGTTC ATTCATGGTATTCTTGTTGGCAGTGCACTCTCCACCATGTACTCTAGATGTGATAATGTT CAGGATAGCTACAAGGTTTTTGAAGAGATGCAGGAACGAGATGGAGTCTCATGGACAGCA ATGGTTGCTGGTTTTGCTACACATGGTCATTCAGTTGAGGCATTCCTAACATTCAGGAAT ATGATTCTTGATGGATTTAAGCCAGATCATGTGTCGTTAACTGCCATTCTTTCAGCTTGT AATAGACCAGAGTGTTTACTCAAAGGGAAGGAAGTTCATGGTCACACACTTCGTGTCTAT GGAGAAACCACATTCATAAACGATTGTTTTATTTCCATGTATTCAAAATGTCAAGGGGTA CAAACAGCTAGAAGAATTTTTGATGCAACTCCACGCAAAGATCAGGTCATGTGGTCCTCA ATGATATCTGGATATGCTACAAATGGTTGCGGTGAGGAAGCAATCTCATTATTTCAGCTT ATGGTGGCAGCAAGCATTCGAATAGATAGTTATATATGCTCGTCTATTCTTAGCCTATGT GCTGATATAGCAAGACCATTCTATTGTAAACCATTACATGGATATGCAATTAAAGCAGGC ATATTGTCTGATCAGTCAGTAAGCAGTTCACTTGTGAAGGTGTACTCCAGAAGTGGCAAT ATGGATGATTCTCGTAAAGTTTTTGATGAAATAAGTGTCCCAGACTTAGTTGCATGGACC ACTATAATTGATGGGTATGCTCAGCATGGAAGTAGTCAGAATGCATTGGCAATGTTTGAT TTGATGGTTCAGCTTGGGGTAAGACCAGATACTGTTGTATTAGTGAGTGTTTTGTCTGCA TGCAGCCGTAATGGTTTAGTTGAGCAAGGTTTTAACTATTTTAATTCAATGAGAACTGCA TATGGGGTTGAGCCAGAGTTACAGCACTACTGTTGCATGGTTGATTTACTTGGTCGATCT GGGAGGCTTGCAGAGGCAAAATATTTTGTTGATAGCATGCCTATGAAACCAGACTTGATG GTATGGAGCACCCTACTTGCTGCTTGCAGAGTTCATGATGACACTGTACTTGGACGGTTT GTAGAAAATAAGATCCGTGAAGGAAATTATGATTCAGGTTCCTTTGCAACTCTGTCGAAC ATTCTTGCGAATTCTGGAGATTGGGAGGAAGTAGCTAGAATCAGAAAAACAATGAAGGGT GTAAATAAAGAACCTGGATGGAGTATGGTGTAA

Peptide Sequence

PEP ID	Os09t0413300-00
PEP Infomation	pep chromosome:IRGSP-1.0:9:14686187:14690226:-1 gene:Os09g0413300 transcript:Os09t0413300-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PENTATRICOPEPTIDE REPEAT PROTEIN 1 description:Pentatricopeptide repeat domain containing protein. (Os09t0413300-00)
Sequence	MPPRLLRSSTPLAAAHLRALSAFAPRAGEGAPHLFGGMRPRAPDLLARLPAELASFARAR AAGRAAPSQFAYGNALAACARAPAPALAEQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRL RDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSAC AAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWT TAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKT EMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLL RRMFHQGLRPNDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNV QDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSAC NRPECLLKGKEVHGHTLRVYGETTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSS MISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAG ILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFD LMVQLGVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRS GRLAEAKYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGNYDSGSFATLSN ILANSGDWEEVARIRKTMKGVNKEPGWSMV

Transcript Sequence

Transcript ID	Os09t0413300-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:14686187:14690226:-1 gene:Os09g0413300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PENTATRICOPEPTIDE REPEAT PROTEIN 1 description:Pentatricopeptide repeat domain containing protein. (Os09t0413300-00)
Sequence	CTCCTCCCTCTCCGATCCCTTCTCCTCCCCCCCTCGCGCCATCTACATGCCGCCTCGCCT CCTCCGGTCCTCCACCCCTCTCGCCGCCGCCCACCTTCGCGCGCTCTCCGCGTTCGCCCC GCGCGCTGGGGAGGGCGCGCCCCACCTGTTCGGCGGAATGCGGCCGCGGGCACCCGACCT CCTCGCGCGCCTCCCCGCCGAGCTCGCGTCATTCGCCCGCGCGCGCGCCGCGGGGCGCGC CGCGCCGAGCCAGTTCGCCTACGGCAACGCGCTCGCCGCGTGCGCCCGCGCCCCCGCCCC CGCGCTTGCCGAGCAGGTCTACTGCGCCGCATGGAAGGACGGGCTCTCCGGGAACGCGTA CGTCTGCACCGGCATGGTCGACCTGCTCGCCAAGAGCGGCCGCCTCCGGGACGCGCTCAG GGTGTTCGCGGACGGGGACCCGAGCAGCGCCGTGTGCTGGAACGCGGCCGTCTCCGGGGC GGTGCGGAACGGCGAGGGCGGGCTCGCCGTCGAGATGTTCCGTGATATGGTGTGGGGCTC GTGCGAGCCCAACTCGTTCACTTACTCCGGGGCTCTCAGCGCGTGCGCGGCGGGTGAAGA GCTGAGCGTTGGGCGGGCGGTGCATGGTCTGGTGCTTCGGCGTGATCCTGAGTACGATGT GTTCGTTGGAACGTCGCTTGTTAACATGTATGCGAAATGTGGTGATATGGGTGCTGCCAT GAGGGAGTTCTGGAGAATGCCAGTCCGGAATGTGGTTTCGTGGACCACCGCGATAGCCGG TTTCGTTCAGGATGATGAGCCAGTCAGTGCAATGCTGCTACTTAGGGAAATGGTGCGGAA TGGCGTGGCGATCAACAAATACACAGCCACAAGTATCTTGCTTGCTTGCGCTCAGATGTC TATGGTAAGAGAGGCTAGCCAGATACATGGTATGGTTTTGAAGACAGAGATGTACTTGGA TTGCGTTGTCAAGGAGGCATTGATTTCGACGTACACTAACTTTGGGTTTATTGAGTTGTC GGAGAAAGTGTTTGAAGAAGCTGGCACAGTAAGCAATAGAAGTATTTGGTCAGCCTTCAT ATCTGGGGTCAGTAACCATAGCCTTCTGAGATCAGTTCAGTTGTTAAGGAGGATGTTTCA TCAAGGTCTAAGACCGAATGACAAATGCTATGCTTCTGTTTTCAGCTCTGTAAATTCAAT TGAATTTGGTGGACAACTTCATTCATCAGCCATAAAAGAGGGGTTCATTCATGGTATTCT TGTTGGCAGTGCACTCTCCACCATGTACTCTAGATGTGATAATGTTCAGGATAGCTACAA GGTTTTTGAAGAGATGCAGGAACGAGATGGAGTCTCATGGACAGCAATGGTTGCTGGTTT TGCTACACATGGTCATTCAGTTGAGGCATTCCTAACATTCAGGAATATGATTCTTGATGG ATTTAAGCCAGATCATGTGTCGTTAACTGCCATTCTTTCAGCTTGTAATAGACCAGAGTG TTTACTCAAAGGGAAGGAAGTTCATGGTCACACACTTCGTGTCTATGGAGAAACCACATT CATAAACGATTGTTTTATTTCCATGTATTCAAAATGTCAAGGGGTACAAACAGCTAGAAG AATTTTTGATGCAACTCCACGCAAAGATCAGGTCATGTGGTCCTCAATGATATCTGGATA TGCTACAAATGGTTGCGGTGAGGAAGCAATCTCATTATTTCAGCTTATGGTGGCAGCAAG CATTCGAATAGATAGTTATATATGCTCGTCTATTCTTAGCCTATGTGCTGATATAGCAAG ACCATTCTATTGTAAACCATTACATGGATATGCAATTAAAGCAGGCATATTGTCTGATCA GTCAGTAAGCAGTTCACTTGTGAAGGTGTACTCCAGAAGTGGCAATATGGATGATTCTCG TAAAGTTTTTGATGAAATAAGTGTCCCAGACTTAGTTGCATGGACCACTATAATTGATGG GTATGCTCAGCATGGAAGTAGTCAGAATGCATTGGCAATGTTTGATTTGATGGTTCAGCT TGGGGTAAGACCAGATACTGTTGTATTAGTGAGTGTTTTGTCTGCATGCAGCCGTAATGG TTTAGTTGAGCAAGGTTTTAACTATTTTAATTCAATGAGAACTGCATATGGGGTTGAGCC AGAGTTACAGCACTACTGTTGCATGGTTGATTTACTTGGTCGATCTGGGAGGCTTGCAGA GGCAAAATATTTTGTTGATAGCATGCCTATGAAACCAGACTTGATGGTATGGAGCACCCT ACTTGCTGCTTGCAGAGTTCATGATGACACTGTACTTGGACGGTTTGTAGAAAATAAGAT CCGTGAAGGAAATTATGATTCAGGTTCCTTTGCAACTCTGTCGAACATTCTTGCGAATTC TGGAGATTGGGAGGAAGTAGCTAGAATCAGAAAAACAATGAAGGGTGTAAATAAAGAACC TGGATGGAGTATGGTGTAAAAACCGAAATGCTTGAGGAGATCAGTATAAATCTGACTTGA TATATATAGCATGGTAGTTCTTTTGCTAACAACTGAAGGCTTCTCTTGGTCTTAGTGTCT ATATGACTATGTAACATTTTCCTATAAAATGCTATTGCACATGACTGTAGGAGTTGGGAG TTAAGGGGAATTCACATGGCATATTGATATTGCTTGTCCAGTTATCTGAAGGATCACCCA ATAAATCAAATGGAAACTTTATTTTCTGCCGGATTCCACATTCACTGCCTGTACTGTATT CAGTACCAGTTCTTGTATATGGATCCTCATCACTATTTTCAATGCCTCCATTTGTGCCTA TAACCCAATCAACTTCATATCCATTGCATGGTTCAGTCTGTCCAAACCGTATGTTTGGCG AGGCTTCATATATGCTATTGATTATTCCAGGGGTTATGCTGAGAAGCAGCGATGTGGCAC CTGACATATGCTGCAGGGTTTGTGTTTTGAATGGTAAGGTGACTGGACAATTATGGTTGT CTTTGTCTGATTGATGAGTTAAAGATGGACTGCACTTGAAGTTTATGACTTTACTAGAAG AGCCATCTTGTCTATTGTTGGGCTTCTGCTGCCTCCCCTGCAGGCACTGCTGACTGTTCA ACTGAGTTATCGGTATTGCAACTTCTTCTGAGCAAGAGGAACTCTCTGAAGCAAATTGCG AGCTTGTTGTTGCAGTTGATTGAGGACCCCAGGGGTGAGATAACGCTCTTTGTGCCATAG AGTTAGGCTTTTTAAATATCTTACAAATAGCCCAGATATCCTGTTTGGTGCAGAAAAATA TTAGAATGATATTATATAGTTATTTTATTTTATTTTTTTGCTATAACTATATAGTAATTC CAGTAAAATACTCACTTTGGCTGGTTTTTTATCTATTGGTATTTTAGAAAGTGAAGGCTC CGTGAGTGAAGGAAGTCTGAACTCATGCATCATCCAATCAGTCTTGAACCCTTTTGCTGC TCTCCCTTTGTAAAAGACAAGAGACTTCTTCAGGCTTATGCATTTGGTTCCCTCGGAAGA GTAGATGGGCCT