Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0402100-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:14106185:14107309:-1 gene:Os09g0402100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:positive factor 1 description:PF1 protein. (Os09t0402100-01)
Sequence

ATGGCGACCGAGGAGGACGCGTCGACCATGGCGGCGGCCGAGGCGGACCCCAAGCCCGCC
GCCACCCCGTCTTACCCGGAGATGATACTGGCGGCGATCGAGGCGCTGGACGACAGGAAC
GGGTCGAACAAGACGGCGATCTCGCAGCACATCGAGGGGAAGTACGAGGGGCTCCTCCCC
CCCGCGCACCCGTCGCTCCTCACAGCGCACCTCGCCCGCATGAAGCAGACCGGCGAGCTC
GCCTTCTCCAAGAACAACTACTTCCGCGGCGACGACCCGTCCCTCCCGCCCAAGCGCGGC
CGCGGCAGGCCGCCCAAGCCCAAGGACGCCGCCGCCGCCGCCGCCGCACCGGCGCCCGCG
CCCGCGGCGCCGGCGGCCTCCTCGCCGCGCCCCCGTGGCCGCCCGCCTAAGCCCAAGGAC
CCCCTCGCCGAGGCGGTCGCGAAGGCCACCAGTGGCATGCCCCGCGCGCGCGGCCGCCCG
CCCAAGAAGGCCAAGGTCGAACAGGAAGACCCCATTGGCGCTCCCGCCGCAGCTTCGGCT
CCCGCCGCGGCGGCTGAGGCCGCGCCGCCTGTCAAGCGCGGCCGTGGGCGCCCGCCCAAG
GTGAGACCCGCCGCGCCGGTCGGGGAGCCAGCCGCTGCTTGA

Peptide Sequence

PEP ID

Os09t0402100-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:14106185:14107309:-1 gene:Os09g0402100 transcript:Os09t0402100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:positive factor 1 description:PF1 protein. (Os09t0402100-01)
Sequence

MATEEDASTMAAAEADPKPAATPSYPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLP
PAHPSLLTAHLARMKQTGELAFSKNNYFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPA
PAAPAASSPRPRGRPPKPKDPLAEAVAKATSGMPRARGRPPKKAKVEQEDPIGAPAAASA
PAAAAEAAPPVKRGRGRPPKVRPAAPVGEPAAA

Transcript Sequence

Transcript ID

Os09t0402100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:14106185:14107309:-1 gene:Os09g0402100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:positive factor 1 description:PF1 protein. (Os09t0402100-01)
Sequence

CTAGTCGTCTTCTTCCCTGGATCCAAATCGAAAATTTCTCTCCCCCTGTTCACACCACGC
CTCACTCCCATGGCGACCGAGGAGGACGCGTCGACCATGGCGGCGGCCGAGGCGGACCCC
AAGCCCGCCGCCACCCCGTCTTACCCGGAGATGATACTGGCGGCGATCGAGGCGCTGGAC
GACAGGAACGGGTCGAACAAGACGGCGATCTCGCAGCACATCGAGGGGAAGTACGAGGGG
CTCCTCCCCCCCGCGCACCCGTCGCTCCTCACAGCGCACCTCGCCCGCATGAAGCAGACC
GGCGAGCTCGCCTTCTCCAAGAACAACTACTTCCGCGGCGACGACCCGTCCCTCCCGCCC
AAGCGCGGCCGCGGCAGGCCGCCCAAGCCCAAGGACGCCGCCGCCGCCGCCGCCGCACCG
GCGCCCGCGCCCGCGGCGCCGGCGGCCTCCTCGCCGCGCCCCCGTGGCCGCCCGCCTAAG
CCCAAGGACCCCCTCGCCGAGGCGGTCGCGAAGGCCACCAGTGGCATGCCCCGCGCGCGC
GGCCGCCCGCCCAAGAAGGCCAAGGTCGAACAGGAAGACCCCATTGGCGCTCCCGCCGCA
GCTTCGGCTCCCGCCGCGGCGGCTGAGGCCGCGCCGCCTGTCAAGCGCGGCCGTGGGCGC
CCGCCCAAGGTGAGACCCGCCGCGCCGGTCGGGGAGCCAGCCGCTGCTTGATTAGCTCCG
ATTCTCCGCATCGCCGCGATGGCGACGATGGTAAGCTCCTTTAGGTTGTAACGTAGTCTT
CAGATTATGTCTCGTACTGATTGGAGGCGCGGCTCGGGTTGCTGCTTATTGTAAGTTAAT
CGGATGGTGGGAGGTTTAGGTGTGCTGGATGGATCATCCGTTGCTGAGAGTTGTGATTGA
ATTCGTGTTATCGCGTGCTGATTATTATGGTAATGTTGGTGACTTTCGTGTCGTTTGTGT
TAATTCTAGATTGGTGGCTGCATTTAGTGTTATCAAATGATGTTGAATTGTTCTATGCCA
TGCCGGACAAAAAAATAAGTCTGATTT