Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0400500-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:14007882:14009971:-1 gene:Os09g0400500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein kinase domain containing protein. (Os09t0400500-01)
Sequence

ATGCCGCGTGCGGCGGTCGGCGTGGTCGTCGCGTTGTTGTGGTGCGCCGCGCTGATCGGT
GGCGGCGCGGGTGCGGGGCAGGACCTCGCGGCGGACACGGCGGCGCTGCTTGCGTTCCGG
GACGCGGTCGGCCCGCGGCTGCCGTGGGCGTCGTCGTCGTCCTCGCCGTGCGGGTGGCGC
GGCGTCCGGTGCGACGCCGGCGGTGGGCGTGTCGTCGCGCTGCAGCTCCCCGGCGCGAAG
CTGGTAGGGAGGGTGCCGACGGGGACGGTGGGAAACCTGACGGCGCTGCGGACGCTGTCG
CTGCGCTCCAACGCGCTCTCCGGCGGGATCCCGGTGGACATCGGCAACTGCGGGGAGCTC
CGGGCACTCTACCTGCAGGGAAACCAGCTCGCCGGCGAGGTGCCGGAGGGGTTCTTCTCG
CTTCTGTTGCTACAGCGGCTCGACCTCTCGCGCAACCGCATCACGGGGAGCATCTCGCCG
GAGTTCAACAAGCTCCGGCGGCTCGCCACTCTCTACTTGGAGAACAACGGCCTCAATGGC
ACCCTCCCCGCCGATCTTGATCTCCCGAAGCTTCAACTCTTCAACGTGTCCAACAACGAC
CAGCTCACCGGCGCCGTGCCGGCGTCGCTCGCCGGGAAGCCGGCGAGCGCCTTCAGTGGG
ACAGGACTCTGCGGTGGCCCTCTAAGCCCGTGTACAAACACTTCGCCGCCATCGCCGTCG
CCGTCGCCGTCGCCGCCGATTCCGCCGCCTCCGGCAGCTTCTCAAGATAGCAAGAGCAGC
AAGCTCTCCGGTGGTGCAATCGCCGGCATCGCTGTCGGCGCCGCGGCGGCGTTGTTGGTG
GCGCTCGCGGTGATCGTCCTCCTCTGTTTCAAGCGTGGGAGGAGAAAGGAAGGGAGACCA
GCCGACGTCGACGAGGACGCGTCCCCGGTGTCGGTCACGGTGGCGAGGACGGACAAGGTC
GAAGTGAAGCGGTCGCGGTCGCGCCCGTCGCAGCAGACGACGACGGCGAGCGGCGCCAAG
AAGCTGGTGTTCGTCGGCGGCGAGCCGGACGTGCCCTACGACCTGGACACGCTGCTGCAC
GCGTCGGCCGAGGTGCTCGGGAAGGGCTGGCTCGGCACGACGTACCGCGCCACGCTCGAG
GGCGGCGCCGCCGTGGTGGCCGTCAAGCGGCTCAGGGAGGCGCCCATCGCGGAGAGGGAG
TTCCGTGACAGCGTGGCCGAGCTCGCCGCGCTCCGCCACGAGAACCTCGCGCCGCTCCGC
GCCTACTTCTACAGCAGGGACGAGAAGCTCCTCGTCTCGGACTTCGTCGGCGCCGGAGCC
CTCTCCTCCCTCCTCCACGGCGGCGGCGGCGCCGTGCGCCGCGCGCGCCTCGGCTTCACG
TCGCGGGCGCGCATCGCGCTGGCGGCGGCGCGCGGCGTCGCGTTCATCCACGGCGCCGGC
TCGTCCCACGGCAACATCAAGTCGTCGAACATCGTCGTCAACCGCACGCACGACGGCGCC
TACGTGACCGACCACGGCCTCGCCCAGCTCCTCGGCGCCGCCGTGCCGCTGAAGCGGGTG
ACCGGCTACCGCGCGCCGGAGGTGAGCGACCTGCGCAGGGCGTCGCGGGAGGCGGACGTG
TACAGCTTCGGCGTGGTGCTCCTCGAGATGCTCACGGGGAGGCCGCCGGCGAACGCGGTG
CCGGGGTTCGACGGCGTCGACCTGCCGCAGTGGGTGCGCGCGGTGGTGCATGAGGAGTGG
ACGGCCGAGGTGTTCGACGCCAGCATCGCCGACGAGGCGCACGCGGAAGAGGAGATGATG
CGGCTGCTAAAGCTCGCCGTCGAATGCACCGAGCAGCGGCCGGAGCGGCGGCCCACCATG
GCCGAGGTGGCGGCGAGGATCGAGCACATCGTCGACACCGTCATCCGGAACGCCGACGTG
GACGATTTCGACAGCGTTTCTCAGTAG

Peptide Sequence

PEP ID

Os09t0400500-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:14007882:14009971:-1 gene:Os09g0400500 transcript:Os09t0400500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein kinase domain containing protein. (Os09t0400500-01)
Sequence

MPRAAVGVVVALLWCAALIGGGAGAGQDLAADTAALLAFRDAVGPRLPWASSSSSPCGWR
GVRCDAGGGRVVALQLPGAKLVGRVPTGTVGNLTALRTLSLRSNALSGGIPVDIGNCGEL
RALYLQGNQLAGEVPEGFFSLLLLQRLDLSRNRITGSISPEFNKLRRLATLYLENNGLNG
TLPADLDLPKLQLFNVSNNDQLTGAVPASLAGKPASAFSGTGLCGGPLSPCTNTSPPSPS
PSPSPPIPPPPAASQDSKSSKLSGGAIAGIAVGAAAALLVALAVIVLLCFKRGRRKEGRP
ADVDEDASPVSVTVARTDKVEVKRSRSRPSQQTTTASGAKKLVFVGGEPDVPYDLDTLLH
ASAEVLGKGWLGTTYRATLEGGAAVVAVKRLREAPIAEREFRDSVAELAALRHENLAPLR
AYFYSRDEKLLVSDFVGAGALSSLLHGGGGAVRRARLGFTSRARIALAAARGVAFIHGAG
SSHGNIKSSNIVVNRTHDGAYVTDHGLAQLLGAAVPLKRVTGYRAPEVSDLRRASREADV
YSFGVVLLEMLTGRPPANAVPGFDGVDLPQWVRAVVHEEWTAEVFDASIADEAHAEEEMM
RLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ

Transcript Sequence

Transcript ID

Os09t0400500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:14007882:14009971:-1 gene:Os09g0400500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein kinase domain containing protein. (Os09t0400500-01)
Sequence

AGTTTGGACTCCGTCGCTCGCTCGCTTGCTTCGGGCGGCGGCGAGGTGACGATGCCGCGT
GCGGCGGTCGGCGTGGTCGTCGCGTTGTTGTGGTGCGCCGCGCTGATCGGTGGCGGCGCG
GGTGCGGGGCAGGACCTCGCGGCGGACACGGCGGCGCTGCTTGCGTTCCGGGACGCGGTC
GGCCCGCGGCTGCCGTGGGCGTCGTCGTCGTCCTCGCCGTGCGGGTGGCGCGGCGTCCGG
TGCGACGCCGGCGGTGGGCGTGTCGTCGCGCTGCAGCTCCCCGGCGCGAAGCTGGTAGGG
AGGGTGCCGACGGGGACGGTGGGAAACCTGACGGCGCTGCGGACGCTGTCGCTGCGCTCC
AACGCGCTCTCCGGCGGGATCCCGGTGGACATCGGCAACTGCGGGGAGCTCCGGGCACTC
TACCTGCAGGGAAACCAGCTCGCCGGCGAGGTGCCGGAGGGGTTCTTCTCGCTTCTGTTG
CTACAGCGGCTCGACCTCTCGCGCAACCGCATCACGGGGAGCATCTCGCCGGAGTTCAAC
AAGCTCCGGCGGCTCGCCACTCTCTACTTGGAGAACAACGGCCTCAATGGCACCCTCCCC
GCCGATCTTGATCTCCCGAAGCTTCAACTCTTCAACGTGTCCAACAACGACCAGCTCACC
GGCGCCGTGCCGGCGTCGCTCGCCGGGAAGCCGGCGAGCGCCTTCAGTGGGACAGGACTC
TGCGGTGGCCCTCTAAGCCCGTGTACAAACACTTCGCCGCCATCGCCGTCGCCGTCGCCG
TCGCCGCCGATTCCGCCGCCTCCGGCAGCTTCTCAAGATAGCAAGAGCAGCAAGCTCTCC
GGTGGTGCAATCGCCGGCATCGCTGTCGGCGCCGCGGCGGCGTTGTTGGTGGCGCTCGCG
GTGATCGTCCTCCTCTGTTTCAAGCGTGGGAGGAGAAAGGAAGGGAGACCAGCCGACGTC
GACGAGGACGCGTCCCCGGTGTCGGTCACGGTGGCGAGGACGGACAAGGTCGAAGTGAAG
CGGTCGCGGTCGCGCCCGTCGCAGCAGACGACGACGGCGAGCGGCGCCAAGAAGCTGGTG
TTCGTCGGCGGCGAGCCGGACGTGCCCTACGACCTGGACACGCTGCTGCACGCGTCGGCC
GAGGTGCTCGGGAAGGGCTGGCTCGGCACGACGTACCGCGCCACGCTCGAGGGCGGCGCC
GCCGTGGTGGCCGTCAAGCGGCTCAGGGAGGCGCCCATCGCGGAGAGGGAGTTCCGTGAC
AGCGTGGCCGAGCTCGCCGCGCTCCGCCACGAGAACCTCGCGCCGCTCCGCGCCTACTTC
TACAGCAGGGACGAGAAGCTCCTCGTCTCGGACTTCGTCGGCGCCGGAGCCCTCTCCTCC
CTCCTCCACGGCGGCGGCGGCGCCGTGCGCCGCGCGCGCCTCGGCTTCACGTCGCGGGCG
CGCATCGCGCTGGCGGCGGCGCGCGGCGTCGCGTTCATCCACGGCGCCGGCTCGTCCCAC
GGCAACATCAAGTCGTCGAACATCGTCGTCAACCGCACGCACGACGGCGCCTACGTGACC
GACCACGGCCTCGCCCAGCTCCTCGGCGCCGCCGTGCCGCTGAAGCGGGTGACCGGCTAC
CGCGCGCCGGAGGTGAGCGACCTGCGCAGGGCGTCGCGGGAGGCGGACGTGTACAGCTTC
GGCGTGGTGCTCCTCGAGATGCTCACGGGGAGGCCGCCGGCGAACGCGGTGCCGGGGTTC
GACGGCGTCGACCTGCCGCAGTGGGTGCGCGCGGTGGTGCATGAGGAGTGGACGGCCGAG
GTGTTCGACGCCAGCATCGCCGACGAGGCGCACGCGGAAGAGGAGATGATGCGGCTGCTA
AAGCTCGCCGTCGAATGCACCGAGCAGCGGCCGGAGCGGCGGCCCACCATGGCCGAGGTG
GCGGCGAGGATCGAGCACATCGTCGACACCGTCATCCGGAACGCCGACGTGGACGATTTC
GACAGCGTTTCTCAGTAGTTTCAGTGACATTTTCTTTCTTTTTTTTCAGTTCATTGGTCC
CAAAAATTGTAAAATTCAAAATTCTTCGTCATGATCATAGTTCATACCTC