Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0397900-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:13891822:13897252:1 gene:Os09g0397900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to FEG protein. (Os09t0397900-01)
Sequence

ATGGCCATCGAGTGCCTCGTGCTAGGGGCGGGGCAGGAGGTGGGGAAGAGCTGCGTGGTG
GTCACCTTCGGCGGCGGGAAGCGCGTCATGTTCGACTGCGGCATGCACATGGGCCACCGC
GACAGCCGCCGCTACCCGGACTTCGACCGCCTCCTCGCCGACGGCGCCGCCGACTACACC
GCCGCCATCTCCTGCGTCGTCATCACCCACTTCCATTTGGATCATATCGGAGCACTGCCG
TACTTCACCGAGGTCTGCGGTTACCACGGTCCAGTTTACATGACGTACCCGACAAAGGCT
TTAGCTCCATTGATGCTGGAAGACTATCGGAAAGTAATGGTAGATCATAGAGGAGAGGAA
GAGCAATATAGCTATGAAGACATCCTACGCTGTATGAGGAAAGTTATACCATTGGACCTG
AAGCAGACCATTCAAGTAGATAAGGACCTTTCGATCCGTGCCTATTATGCTGGACATGTT
CTAGGGGCTGCAATGATATATGCAAAAGTTGGAGATGCTGCTATTGTGTACACTGGAGAT
TACAATATGACACCAGATAGGCACCTTGGAGCAGCGCAAATTGATCGTCTGAAGTTAGAT
CTGTTGATAACAGAATCAACATATGCTAAAACTGTGCGTGACTCGAAGCATGCCCGAGAG
AGGGAGTTCTTAAAAGCAGTCCATAAGTGTGTTTCTGGAGGTGGTAAAGTTCTAATTCCA
GCATTTGCTCTTGGAAGAGCACAGGAGCTATGCATACTACTGGATGACTATTGGGAAAGG
ATGAACCTGAAGATTCCTATTTATTTCTCAGCTGGTTTAACCATTCAAGCCAACATGTAC
TACAAAATGCTTATTGGATGGACTAGCCAAAAGATCAAGAACAGCTACACAGTTCATAAC
CCATTTGACTTCAAGCATGTTTGCCACTTTGAGCGTTCTTTCATTAACAATCCTGGTCCA
TGTGTGCTTTTTGCAACACCTGGTATGATTAGTGGTGGATTTTCCCTTGAAGTGTTTAAG
AAATGGGCTCCATCAGAAAAAAATCTGGTTACACTTCCTGGATATTGTGTTGCTGGAACC
ATTGGCCATAAGTTGATGTCTGGAAAACCTACCAGGATTGACATAGACAAGGACACCCAT
ATTGATGTCAGATGTCAGATCCATCAACTGTCATTCAGTCCTCATACAGACTCAAAGGGG
ATCATGGATCTTACTGAATTTCTTTCTCCCAGTCATGTAATTCTAGTTCATGGCGAAAAA
CCTCAGATGGCTTTCTTGAAGGAGCGGATCGAATCCGAGTTGGGGATGCAATGCTGTTAC
CCAGCTAACAACGAGACCGTCTCTATTCCGACATCCCAGAACTTGAAAATAAACGCCACG
GAGAAGTTCATTGTGAGCTTCTGCATGGATGAAACTGAAAATGATCCGCAGAAGCAGAAC
CTGAATTTTGGTGGCGACATGCCACAAGGCTGCAGGACTGAAGGAGTAGCTGAGGGCGTT
CTTCTGATGGAGAAGTCCAAGACTCCGAAGATTTTGCGCGAGGACGAGCTGCTTCACTCG
CTGGGCATGGAAACGCATTTTGTCCATTTTGAACCACTGCATCCGTCCAGCATTGAGGTA
AAACATACTGGTGAGTCCGCGGTGCAGCAGAGCAGTTTAGAACATTTAGACTGCGAGTGA

Peptide Sequence

PEP ID

Os09t0397900-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:13891822:13897252:1 gene:Os09g0397900 transcript:Os09t0397900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to FEG protein. (Os09t0397900-01)
Sequence

MAIECLVLGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYT
AAISCVVITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEE
EQYSYEDILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGD
YNMTPDRHLGAAQIDRLKLDLLITESTYAKTVRDSKHAREREFLKAVHKCVSGGGKVLIP
AFALGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKNSYTVHN
PFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAGT
IGHKLMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTEFLSPSHVILVHGEK
PQMAFLKERIESELGMQCCYPANNETVSIPTSQNLKINATEKFIVSFCMDETENDPQKQN
LNFGGDMPQGCRTEGVAEGVLLMEKSKTPKILREDELLHSLGMETHFVHFEPLHPSSIEV
KHTGESAVQQSSLEHLDCE

Transcript Sequence

Transcript ID

Os09t0397900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:13891822:13897252:1 gene:Os09g0397900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to FEG protein. (Os09t0397900-01)
Sequence

GGAGAGGCAACGGAGGCGTGGTTGAGGGATTCCGGCGTGGAGCGGCGCCGGGAGAGGGGA
GAAGCGGCGGCGGCGGCGGCGGCGGCATGGCCATCGAGTGCCTCGTGCTAGGGGCGGGGC
AGGAGGTGGGGAAGAGCTGCGTGGTGGTCACCTTCGGCGGCGGGAAGCGCGTCATGTTCG
ACTGCGGCATGCACATGGGCCACCGCGACAGCCGCCGCTACCCGGACTTCGACCGCCTCC
TCGCCGACGGCGCCGCCGACTACACCGCCGCCATCTCCTGCGTCGTCATCACCCACTTCC
ATTTGGATCATATCGGAGCACTGCCGTACTTCACCGAGGTCTGCGGTTACCACGGTCCAG
TTTACATGACGTACCCGACAAAGGCTTTAGCTCCATTGATGCTGGAAGACTATCGGAAAG
TAATGGTAGATCATAGAGGAGAGGAAGAGCAATATAGCTATGAAGACATCCTACGCTGTA
TGAGGAAAGTTATACCATTGGACCTGAAGCAGACCATTCAAGTAGATAAGGACCTTTCGA
TCCGTGCCTATTATGCTGGACATGTTCTAGGGGCTGCAATGATATATGCAAAAGTTGGAG
ATGCTGCTATTGTGTACACTGGAGATTACAATATGACACCAGATAGGCACCTTGGAGCAG
CGCAAATTGATCGTCTGAAGTTAGATCTGTTGATAACAGAATCAACATATGCTAAAACTG
TGCGTGACTCGAAGCATGCCCGAGAGAGGGAGTTCTTAAAAGCAGTCCATAAGTGTGTTT
CTGGAGGTGGTAAAGTTCTAATTCCAGCATTTGCTCTTGGAAGAGCACAGGAGCTATGCA
TACTACTGGATGACTATTGGGAAAGGATGAACCTGAAGATTCCTATTTATTTCTCAGCTG
GTTTAACCATTCAAGCCAACATGTACTACAAAATGCTTATTGGATGGACTAGCCAAAAGA
TCAAGAACAGCTACACAGTTCATAACCCATTTGACTTCAAGCATGTTTGCCACTTTGAGC
GTTCTTTCATTAACAATCCTGGTCCATGTGTGCTTTTTGCAACACCTGGTATGATTAGTG
GTGGATTTTCCCTTGAAGTGTTTAAGAAATGGGCTCCATCAGAAAAAAATCTGGTTACAC
TTCCTGGATATTGTGTTGCTGGAACCATTGGCCATAAGTTGATGTCTGGAAAACCTACCA
GGATTGACATAGACAAGGACACCCATATTGATGTCAGATGTCAGATCCATCAACTGTCAT
TCAGTCCTCATACAGACTCAAAGGGGATCATGGATCTTACTGAATTTCTTTCTCCCAGTC
ATGTAATTCTAGTTCATGGCGAAAAACCTCAGATGGCTTTCTTGAAGGAGCGGATCGAAT
CCGAGTTGGGGATGCAATGCTGTTACCCAGCTAACAACGAGACCGTCTCTATTCCGACAT
CCCAGAACTTGAAAATAAACGCCACGGAGAAGTTCATTGTGAGCTTCTGCATGGATGAAA
CTGAAAATGATCCGCAGAAGCAGAACCTGAATTTTGGTGGCGACATGCCACAAGGCTGCA
GGACTGAAGGAGTAGCTGAGGGCGTTCTTCTGATGGAGAAGTCCAAGACTCCGAAGATTT
TGCGCGAGGACGAGCTGCTTCACTCGCTGGGCATGGAAACGCATTTTGTCCATTTTGAAC
CACTGCATCCGTCCAGCATTGAGGTAAAACATACTGGTGAGTCCGCGGTGCAGCAGAGCA
GTTTAGAACATTTAGACTGCGAGTGAAATGAATGAACAATTCTTCTTTTCAACTACTCTC
GACTTTGGAGACTTTTGAGAGGTATAGCCAGAAGGGGAAGAGTTGTGTAGTTAGACTGTT
GGAAAAAAAGAACACTTTTCATCCGTCAATTGTTATTTTGGTGGATT