Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0386500-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:13181330:13184736:1 gene:Os09g0386500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0386500-01)
Sequence

ATGGCCAAGACCAAGCAGGGCAAGAAGGACGTCGAATCCTACACCATCAAGGGCACCACC
AAGATCGTCCGAGTGGGGGATTGCGTGCTGATGCGGGCGTCGGACACGGAGAAGGCGCCG
TACGTGGGGAGGGTGGAGAGGCTGGAGACGGACGGGAGGGGGAGCGTGCGGGTGCGGGTG
CGGTGGTACTACCGGCCGGAGGAGTCCAAGGGCGGGAGGAGGCAGTTCCATGGCGCCAAG
GAGCTGTTCCTCTCCGACCACTTCGACACCCAGAGCGCCCACACCATCGAGGGCAAGTGC
GTCGTCCACTCCTTCAAGAACTACACCAAGCTCGACAACGTCGGCCCCGAGGACTTCTTC
TGCCGCTTCGAGTACAAGGCCGCCACCGGCGCCTTCACCCCCGACCGCGTCGCCGTGTAC
TGCAAGTGCGAGATGCCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAG
GACTGGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGATCAT
TTCCTGTGCGCAGATTGTGTCAAAGAAAATGGCACGAAGAGACCTTCAAATTCATATCCA
GCATCATCAAATTCTGATTCTAAGGTTGAGCCAAAAAAGCGGAAGAGGTAA

Peptide Sequence

PEP ID

Os09t0386500-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:13181330:13184736:1 gene:Os09g0386500 transcript:Os09t0386500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0386500-01)
Sequence

MAKTKQGKKDVESYTIKGTTKIVRVGDCVLMRASDTEKAPYVGRVERLETDGRGSVRVRV
RWYYRPEESKGGRRQFHGAKELFLSDHFDTQSAHTIEGKCVVHSFKNYTKLDNVGPEDFF
CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEQAKKLDH
FLCADCVKENGTKRPSNSYPASSNSDSKVEPKKRKR

Transcript Sequence

Transcript ID

Os09t0386500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:13181330:13184736:1 gene:Os09g0386500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0386500-01)
Sequence

CTCCTCCTTCCCTTGTCTGAACGGGGGGAGCTGTGGCCACACCTCTCCCCCCACCTCCTC
CTCCTCTAGGGTTTCCTCCCAATCCCCTCCATGGCCAAGACCAAGCAGGGCAAGAAGGAC
GTCGAATCCTACACCATCAAGGGCACCACCAAGATCGTCCGAGTGGGGGATTGCGTGCTG
ATGCGGGCGTCGGACACGGAGAAGGCGCCGTACGTGGGGAGGGTGGAGAGGCTGGAGACG
GACGGGAGGGGGAGCGTGCGGGTGCGGGTGCGGTGGTACTACCGGCCGGAGGAGTCCAAG
GGCGGGAGGAGGCAGTTCCATGGCGCCAAGGAGCTGTTCCTCTCCGACCACTTCGACACC
CAGAGCGCCCACACCATCGAGGGCAAGTGCGTCGTCCACTCCTTCAAGAACTACACCAAG
CTCGACAACGTCGGCCCCGAGGACTTCTTCTGCCGCTTCGAGTACAAGGCCGCCACCGGC
GCCTTCACCCCCGACCGCGTCGCCGTGTACTGCAAGTGCGAGATGCCGTATAACCCGGAT
GATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGGTTCCATCCATCTTGTATGGGAATG
ACCATTGAGCAGGCCAAAAAATTAGATCATTTCCTGTGCGCAGATTGTGTCAAAGAAAAT
GGCACGAAGAGACCTTCAAATTCATATCCAGCATCATCAAATTCTGATTCTAAGGTTGAG
CCAAAAAAGCGGAAGAGGTAATTGCTGTGACACGAGCCATCCGTGGTGAGGAGATGCACT
GTTTATGGCGTCAGCTCTTCATTGCTGGTGCAAAGTCAAAACGTGGAGGGTGTACAGTGC
AGATGAAGAGCTAGGCTAGGTCCAAGATCGCGTTAACTTATCATTTGCCCGAATTTGGGA
ACGTTTCCATCAGTCTAGGCAAAAGAACGAACTTCATTGATGCTGTTGGCTCGTTCAGTT
GTAGCCAGTGTGGACTGGATGAGTGTCAGCGTGTTTTAGCTTTTTGCCTGGTACAGGAAA
ACGTTCCCAGCGTGGATGATGTTGATGATAGCTTAACTGTAGTTTCATAATTTGGGTGTC
CCTGAGTTCTGTGACCTGTTTATTGATAAGTGAATGCCGCATGATGATGCTGTTGCTGC