Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0326800-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:9620376:9628563:1 gene:Os09g0326800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A description:Similar to PSMD2 subunit (Fragment). (Os09t0326800-01)
Sequence	ATGCCGCCGCGCAAGGACCCCAACGGGGGCGCCTTCCCCTCGGAGCCCGCCCCGCCGCAG CCGGCCAAGGCCAAGGGGAAGAAGAAGGATGAGAACAAGGACGACGACCTGTCGGAGGAG GACCAGGCGCTCAAGGAGCAGCTCGAGCTCTACGTGGTGCGGGCGCAGGACCCCGATCCC GGCGTCCAGAAGCTCGCCCTCGAGAGCATGAGGCAGGAGATCCGTTCTGCGACAAGTTCA ATGACCTCTGTCCCAAAGCCTCTCAAATTCCTTCGCCCGCACTATGGAATTCTCAAGGCT TACTTTGAGACAATGCCAGAATCTGAGCTGAAGAAGTATATGGCTGATATCTTGTCAGTA TTGGCCCTGACAATGTCCGCTGAAGGAGAAAGAGAGAGCCTCAAGTACCGAATGATAGGC TCTGAAGGTGACATTGGTTCATGGGGTCATGAATATGTGAGAAACTTGGCTGGTGAAATT GCACAGGAATTCCAGAAGCGCCAGGATGATGGCATGACAACTGATTCCCTGAAGGAACTG GTGGAGCAAATTGTTTCATTCCACATGAAGCATAATGCTGAACCTGAAGCTGTGGATCTC CTAATGGAGGTCGAAAAGCTTGATTTGCTAGTTAAGCACGTTGACTCCACAAACTACAAA AGGACCTGCTTGTACCTCACTAGTTCTTCTAAATATCTTCCTGCTCCTGATGACATGTCG GCACTTAAAATAGCTTTTGAGATTTACATGAAATTTGGAGATTTTGCAAATGCTTTGCGT ATTGCACTTCTGCTTGATGACAAGTCTCTGGAGTTGAAGCAGATTTTTACAGCAACTGAT GATTTTCACCTGAAGAAGCAATTCGCGTTTATCATAGCACGCCATGGTTTAAGCACCGAC ATTGATGATGACATAGCTGCAGATGAAAATGAGAAGGAGGCTTTGCAGGACATAATTTCT AATATTAAATTGAGTGAGGGGTACCTTACACTTGCACGAGATATTGAGGTCATGGAGCCA AAATCTCCAGAAGACATATATAAGGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCC AGTCTTGATTCTGCAAGACAGAATCTGGCGGCAACATTTGTCAATGCATTCGTGAATGCT GGATTTGGCCAGGATAAACTCATGACCGCACCATCAGATTCTTCGGGCAGTGGTTCTTCT GGAAACTGGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGTCTGGGA ATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGATAAGTACCTGCACAGT AATGATATTCATGTTGTTGCTGGGGCTTTGCTAGGTATTGGAATTGTTTCTTGTGGTGTG AAGAGTGACTGCGATCCGGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCA ATTATACGAATTGGAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCTCCCAGAAAGAG GAGGTTAGAGAGAATCTTACAGCTTTTCTGAGTGACTCCCAAGTACCTCTGGAGGTCTTA GTCTTCGCTGCCATCTCCTTAGGTTTGGTGTTCGTTGGTTCTTGTAATGAAGAGATTGCA CAGACAATCATATGTGTCTTAATGGAGCATAGTGAGCCAGAGCTTGCAGAGCCAATTATA CGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGGAAAGTGTGGAGGCG ACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACACTG ATGTCGCTGGCATATGCTGGGACAGGGAACGTGCTTAAGGTTCAAAAACTCCTTGGAATC TGTTCCGAGCATCTTGAGAAAGGTGAAACCCACCAAGGACCAGCAGTTCTTGGAATCTCC CTAATTTCCATGGCTGAAGAATTAGGGGCGGAAATGGCTGTACGTTCCCTTGAACGTCTT TTACAGTATGGCGAGCAGAATATTAGAAGGGCGGTTCCTCTAGCTCTGGGCTTGCTTTGC ATATCCAATCCAAAGGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGAT GCGGAAGTTTCTATGGCTGCAATAATCTCCCTGGGCTTGATAGGGGCTGGTACAAACAAT GCCCGAATAGCTGGGATGCTTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACAT CTGTTTTGTGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTTTGCTGACCCTT TCGCCATATCACTCTGACCGGTTCCTTCTGTCCCCCATAGCACTTGCTGGTCTTGTGACG GTTCTGCATGCCTGCCTTGACATGAAATCCATCATTCTGGGGAAGTACCATTACATGCTT TATATCCTTGCCCTAGCTATGCAGCCTCGGATGCTATTGACTGTGGATGAGGATCTCAAG CCCCTCTCTGTTCCGGTTTGTGTTGGTCAAGCAGTTGACGTCGTCGGTCAGGCGGGTCGA CCCAAGACAATTACTGGATTCCAGACGCATTCAACGCCTGTATTACTTGCCGCAGGGGAA CGAGCAGAGCTGGCAACTGAAAAATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTG ATCCTAAGAAATAACCCAGAGTATCATGAAGATTAA

Peptide Sequence

PEP ID	Os09t0326800-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:9620376:9628563:1 gene:Os09g0326800 transcript:Os09t0326800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A description:Similar to PSMD2 subunit (Fragment). (Os09t0326800-01)
Sequence	MPPRKDPNGGAFPSEPAPPQPAKAKGKKKDENKDDDLSEEDQALKEQLELYVVRAQDPDP GVQKLALESMRQEIRSATSSMTSVPKPLKFLRPHYGILKAYFETMPESELKKYMADILSV LALTMSAEGERESLKYRMIGSEGDIGSWGHEYVRNLAGEIAQEFQKRQDDGMTTDSLKEL VEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKHVDSTNYKRTCLYLTSSSKYLPAPDDMS ALKIAFEIYMKFGDFANALRIALLLDDKSLELKQIFTATDDFHLKKQFAFIIARHGLSTD IDDDIAADENEKEALQDIISNIKLSEGYLTLARDIEVMEPKSPEDIYKVHLIDGRGATSS SLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSGSGSSGNWLFKNKEHGKASAAASLG MILLWDSDSGLAQLDKYLHSNDIHVVAGALLGIGIVSCGVKSDCDPAFALISEYFSRDES IIRIGAILGLGIAYAGSQKEEVRENLTAFLSDSQVPLEVLVFAAISLGLVFVGSCNEEIA QTIICVLMEHSEPELAEPIIRLLPVALGLLYLGKQESVEATAEVSKTFDEKIRNYCDVTL MSLAYAGTGNVLKVQKLLGICSEHLEKGETHQGPAVLGISLISMAEELGAEMAVRSLERL LQYGEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNN ARIAGMLRNLSSYYYKEAGHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLSPIALAGLVT VLHACLDMKSIILGKYHYMLYILALAMQPRMLLTVDEDLKPLSVPVCVGQAVDVVGQAGR PKTITGFQTHSTPVLLAAGERAELATEKYLPLTPVLEGFVILRNNPEYHED

Transcript Sequence

Transcript ID	Os09t0326800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:9620376:9628563:1 gene:Os09g0326800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A description:Similar to PSMD2 subunit (Fragment). (Os09t0326800-01)
Sequence	AAGCACACAAGAAAGGATCCCAACGGGCCGCGCCGCGCTCCTCTCGCTCCCTCGCCTCCG CGGAGCTCGATTCCTAAACCCTACCTCGCCGCGCCCCGCCGCCGCCGCGGGCCGGGGAGA TCGCCCTCGCCATGCCGCCGCGCAAGGACCCCAACGGGGGCGCCTTCCCCTCGGAGCCCG CCCCGCCGCAGCCGGCCAAGGCCAAGGGGAAGAAGAAGGATGAGAACAAGGACGACGACC TGTCGGAGGAGGACCAGGCGCTCAAGGAGCAGCTCGAGCTCTACGTGGTGCGGGCGCAGG ACCCCGATCCCGGCGTCCAGAAGCTCGCCCTCGAGAGCATGAGGCAGGAGATCCGTTCTG CGACAAGTTCAATGACCTCTGTCCCAAAGCCTCTCAAATTCCTTCGCCCGCACTATGGAA TTCTCAAGGCTTACTTTGAGACAATGCCAGAATCTGAGCTGAAGAAGTATATGGCTGATA TCTTGTCAGTATTGGCCCTGACAATGTCCGCTGAAGGAGAAAGAGAGAGCCTCAAGTACC GAATGATAGGCTCTGAAGGTGACATTGGTTCATGGGGTCATGAATATGTGAGAAACTTGG CTGGTGAAATTGCACAGGAATTCCAGAAGCGCCAGGATGATGGCATGACAACTGATTCCC TGAAGGAACTGGTGGAGCAAATTGTTTCATTCCACATGAAGCATAATGCTGAACCTGAAG CTGTGGATCTCCTAATGGAGGTCGAAAAGCTTGATTTGCTAGTTAAGCACGTTGACTCCA CAAACTACAAAAGGACCTGCTTGTACCTCACTAGTTCTTCTAAATATCTTCCTGCTCCTG ATGACATGTCGGCACTTAAAATAGCTTTTGAGATTTACATGAAATTTGGAGATTTTGCAA ATGCTTTGCGTATTGCACTTCTGCTTGATGACAAGTCTCTGGAGTTGAAGCAGATTTTTA CAGCAACTGATGATTTTCACCTGAAGAAGCAATTCGCGTTTATCATAGCACGCCATGGTT TAAGCACCGACATTGATGATGACATAGCTGCAGATGAAAATGAGAAGGAGGCTTTGCAGG ACATAATTTCTAATATTAAATTGAGTGAGGGGTACCTTACACTTGCACGAGATATTGAGG TCATGGAGCCAAAATCTCCAGAAGACATATATAAGGTTCATTTGATTGATGGCCGAGGGG CTACAAGCTCCAGTCTTGATTCTGCAAGACAGAATCTGGCGGCAACATTTGTCAATGCAT TCGTGAATGCTGGATTTGGCCAGGATAAACTCATGACCGCACCATCAGATTCTTCGGGCA GTGGTTCTTCTGGAAACTGGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCG CTAGTCTGGGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGATAAGT ACCTGCACAGTAATGATATTCATGTTGTTGCTGGGGCTTTGCTAGGTATTGGAATTGTTT CTTGTGGTGTGAAGAGTGACTGCGATCCGGCATTTGCTCTTATTTCTGAGTATTTCAGCA GGGATGAGTCAATTATACGAATTGGAGCAATCCTTGGTCTTGGTATTGCTTATGCTGGCT CCCAGAAAGAGGAGGTTAGAGAGAATCTTACAGCTTTTCTGAGTGACTCCCAAGTACCTC TGGAGGTCTTAGTCTTCGCTGCCATCTCCTTAGGTTTGGTGTTCGTTGGTTCTTGTAATG AAGAGATTGCACAGACAATCATATGTGTCTTAATGGAGCATAGTGAGCCAGAGCTTGCAG AGCCAATTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGGAAA GTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTG ACGTGACACTGATGTCGCTGGCATATGCTGGGACAGGGAACGTGCTTAAGGTTCAAAAAC TCCTTGGAATCTGTTCCGAGCATCTTGAGAAAGGTGAAACCCACCAAGGACCAGCAGTTC TTGGAATCTCCCTAATTTCCATGGCTGAAGAATTAGGGGCGGAAATGGCTGTACGTTCCC TTGAACGTCTTTTACAGTATGGCGAGCAGAATATTAGAAGGGCGGTTCCTCTAGCTCTGG GCTTGCTTTGCATATCCAATCCAAAGGTAAATGTTATGGACACAATGAGCAGACTGAGCC ATGATGCAGATGCGGAAGTTTCTATGGCTGCAATAATCTCCCTGGGCTTGATAGGGGCTG GTACAAACAATGCCCGAATAGCTGGGATGCTTCGGAACCTCTCAAGTTATTATTACAAAG AAGCAGGACATCTGTTTTGTGTGAGGATTGCTCAAGGTCTTGTTCACCTTGGGAAGGGTT TGCTGACCCTTTCGCCATATCACTCTGACCGGTTCCTTCTGTCCCCCATAGCACTTGCTG GTCTTGTGACGGTTCTGCATGCCTGCCTTGACATGAAATCCATCATTCTGGGGAAGTACC ATTACATGCTTTATATCCTTGCCCTAGCTATGCAGCCTCGGATGCTATTGACTGTGGATG AGGATCTCAAGCCCCTCTCTGTTCCGGTTTGTGTTGGTCAAGCAGTTGACGTCGTCGGTC AGGCGGGTCGACCCAAGACAATTACTGGATTCCAGACGCATTCAACGCCTGTATTACTTG CCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAATATCTTCCACTGACACCAGTTCTTG AGGGTTTTGTGATCCTAAGAAATAACCCAGAGTATCATGAAGATTAAGGGATAGATATGG CACACGCAAAATGCAGGAAGGGCCTGGAGTATTAGGAAGAGGCTTGGATCAATATCTAAT TGTCACACAAAGCAATGAACAAATAGCACGATGAAGACAATGCATACTTGATACGGTGAG GACTGAGTTGTAACAAAGAGTTCAGGTATAATGGGGCCAATATGACAGGAGAACTTTGTA AGAATTAGGAATAGAATCTGTGGGTGTAATGGCATGGCCGAAAATGTTTTTGACTATACC AGAATGAAAATGACCCAAGAGTTTGTTGCC