Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0313500-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:8510839:8516543:-1 gene:Os09g0313500 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os09t0313500-01)
Sequence

ATGGCCGTACGACGAGCGCCGCTGCCGGTGGGACCGAGGGCCGCCGCCGACGGCAATCCG
GCGCCGCCGGGTGAGTCGAGCAAAGGCCCCGGCCTTGACGGCGAGTTCCGGCAGCTGGTG
GACATCGCCGACGAGGGGGTCAAGCTGGTCAACGACGCCGAGCTGAGGCTGAAGAAGCGG
GCGTGCGACAACCCCAAGGACCTCGCCGCGTGGCTCCGGCGGCTCCAGAGCGCCAAGGAG
GACCTGGACGACGCGCTCGATGAATTCAGAGCTTCCATGGCGGCGCAGCGGCGGCGGCCG
GAACAGGATCAGGAGAGGAAGAAATCGATTCGCCATTGGTTCTCACGCTCATCAGCTAAC
CATGAGGTTGACAAGAAAATGAAAATCACTACTGAAAAGCTGAATAAGAAATTCCATGGG
ATCTTACAGAATGGTCGTGAACTTGGCCTTCAACCAATCAAATTGCAAAGACACAGTCGA
ATATCTGAATTTCCTGGGGATCTCTCACCCCAGTACACTCTTGTAGGAGATATTGAACAA
GAAAAGTTGAAGTTGATCAACAAATTGACTGGCAGCGAAAGCACCAGTGCTGTCATTGCA
ATCTTTGGGTTGGGTGGAATTGGCAAGACTATGTTGGCACGAAAAGTACATGATGATCTC
CTCACAGAAAGTGCATTCAGCACTGTTGTATGGGTAAATGGCTCCAAATCTTTCACTAAA
AAGAAATTGCTACGTGCAATTCTAAGTTCTTCTGGTGGCAAGCCTGGAGAGGCAAAAAAA
AAGAGCAATGAGCAAATTGAGGACATGTTGGTTACAATACTTGGAGCAAAGAAATTCTTA
CTGGTACTTGATGATGTATGGGCTGACCAGATTCATCAGGATTTTCTAAAAGTTAGCTTG
CAAGCACAGCAAGGAAGCCGAATTCTGTTGACTACCCAGGATGAGGGAGTTCTGAGGCAA
ATTGCTTCTGATGACATCCACAAAGTAAACAAATTGAGTTTCCCCGATTGTTGGTCTCTG
CTCTGCAGTAGTGCTTGCCTGGATGAACAGGATTGCGACGCATTAACAGATATTGGTATA
ACAATTATCCAGAAATGTAACAAGGTTCCATTGGCTATCAAAGTTTTGGGTGGTCTCCTA
GGAACAAAGAACCCAAGAAGAGAGGAGTGGCAGGAAGTGATCAGTGAGAGTGAAGGGTGG
ACTCTTGAGAACGTTCCTGATGGCATGGAGGAAATATGTCTCCCCATCTACTTAGCCTAT
TACAGTCTGCCATATCATTTGAAATTATGTTTTGATTACTGCTTGCAGCTCCCTGAAGGA
TTTGTTATTAGGCCACAAATTGTTACTCAGCTATGGATAGCAGAGGGCTTTATTCGAGAA
CAAGATAACCGCAACCCTGAAGATATCGCAGAACAGTATTACAAGGAATTGGTTCTAAGA
AATCTTCTGCAGCCTGAGATTGGGTGCTTTGACATGTCGAAATGCACAGTGCATGATTGT
GTAAAGTCCTTGCTGCAACCTTCAACTAAAGACAAGAAATCAACAGATAGCACCGAAGGG
ACAAAGTTTTTTAGAAGCTTCAGGACAGCTTTTGTCTACAAGAATCCATCAGGAGATCGC
GGCCTCAATTGGCTCATAAATTTGAGATCTCTCATAAATTTGAGATCTCTTGACCTTACT
GGTACTTGCATTAGGTACATACCGAAGTCACTAGAACATCTACATCACCTTAGGCTCTTA
AACCTCTCACTGACACAAGTTTTAGAGCTTCCGGAATCTATTGAGAGCCTCAGCAACCTG
CAGTTCTTGATACTTCGGTGTTGCTATTGGCTCGAAACCCTGCCAGAGGAAATTAGTAAT
CTGGTCAGCTTGCGGAGCCTTGATTTGGAAGGGACTACACCACATATAGTTCTGTCAAGA
TTATCAGCCCTGGAGCAGCTAACTGCACTGCATGGTTTCATAGTAGACCACAATGCGGCA
GTACCCGACAATGATCATCAGAACGGATGGCCTATGAAAGAGCTGAGTCCTTTGAACTCA
TTGCGGAGCCTGCAGATAATGGGCATCGATAGAGTTCCAGATGAATCTAGGGCGCAAGAA
GCTAACCTAGCAAGCAAGTCTCACCTCACACATCTTGAGTTATGTGGTAGTAGCACCAGT
GATTCACAAGTCTTTGTACCAGAGGAAGAACAAGATAGATGGCTCAGTGTGCTTTGCGGT
CTCCAACCTCCACAATGCTTGGAATATCTCAAAATAGCGAGCTATTATGGATCATCTCTT
CCGGATTGGATATTGCAACTTCGAAACCTCCAGCGGCTTGTGCTTACCGATTGCAAACTC
TGTGATAGCCTCCCAGCATTGGGGCAGCTACAACAACTGAAGTTCCTCACAATCAATGGA
TGTCCTAAGTTACGCATCATCGAGTGGCGGACTGGTGCTACGACTAAACTGGTATTTCCA
AAGCTAGAGCAGCTGGACCTCAGGGACATGCAGGCCTTGGAATCATTGGATAGGTTTAAA
CATGGTGACCTGCTTTCCCTGACCAAATTTCACCTAGAGAACAGTCCCAAATTGAGATCC
CTCCCATCTGGCCTTGGTTACTGCAAGGTACTGACAAGTATGAAGATTGTTGGTGCTGAT
AGCCTCCAAGTGATTGACAACCTTCCTATGCTCAAGGAATTGGTTGTCCAAGACTGCAGA
GAACTTGTCATGATCTCAAATCTTCCAGTGCTTCAGGTCCTGGTAGTCGTTGACTGCTCC
ATGCTGCAAGATTTGAGGGGAGTTGCAGGCCTAAGGCATGTCCGCCTCGTGGACAGAGTG
ACGAAAGAACTTCCAGATTGGTTGACAGGCCATGAGGCTCCTCTGCTGCAAACATTCACC
ATAGTCGGCACGACAGAACTACTCAGGAAGTTAGTTCCCAACAGCAAAGGCTGGTCGGCT
ATACGTAACATGGACAGAGTTTATGCAAATTTGCCTGATGGGGCCCCGTTCTTGGCTTAC
AACAAGGGCAGACCTGATTTTCAAATGATTAAGACAGCGGTTGGCCCTCAGTTGGAAGAT
CGTCCTTCTGCATATATTATCCTCAGAAAGCTTGTCAGGATGGCCTCACAAACTGGCCTT
CTGGATAGCTTAAAACGGTATTTCCTCCCTCCACTTGCCATTGTTCTTGTACTCTTGCTG
CTGGCAACCAGAGACTTCACGCTCATTGGAATCTTGCTCGCCTTCTTTGCGGCAATAGCA
TGCCTTGCTGGGTTTTATTATATATATATTCAGAAAGCTTCAGGGTGA

Peptide Sequence

PEP ID

Os09t0313500-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:8510839:8516543:-1 gene:Os09g0313500 transcript:Os09t0313500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os09t0313500-01)
Sequence

MAVRRAPLPVGPRAAADGNPAPPGESSKGPGLDGEFRQLVDIADEGVKLVNDAELRLKKR
ACDNPKDLAAWLRRLQSAKEDLDDALDEFRASMAAQRRRPEQDQERKKSIRHWFSRSSAN
HEVDKKMKITTEKLNKKFHGILQNGRELGLQPIKLQRHSRISEFPGDLSPQYTLVGDIEQ
EKLKLINKLTGSESTSAVIAIFGLGGIGKTMLARKVHDDLLTESAFSTVVWVNGSKSFTK
KKLLRAILSSSGGKPGEAKKKSNEQIEDMLVTILGAKKFLLVLDDVWADQIHQDFLKVSL
QAQQGSRILLTTQDEGVLRQIASDDIHKVNKLSFPDCWSLLCSSACLDEQDCDALTDIGI
TIIQKCNKVPLAIKVLGGLLGTKNPRREEWQEVISESEGWTLENVPDGMEEICLPIYLAY
YSLPYHLKLCFDYCLQLPEGFVIRPQIVTQLWIAEGFIREQDNRNPEDIAEQYYKELVLR
NLLQPEIGCFDMSKCTVHDCVKSLLQPSTKDKKSTDSTEGTKFFRSFRTAFVYKNPSGDR
GLNWLINLRSLINLRSLDLTGTCIRYIPKSLEHLHHLRLLNLSLTQVLELPESIESLSNL
QFLILRCCYWLETLPEEISNLVSLRSLDLEGTTPHIVLSRLSALEQLTALHGFIVDHNAA
VPDNDHQNGWPMKELSPLNSLRSLQIMGIDRVPDESRAQEANLASKSHLTHLELCGSSTS
DSQVFVPEEEQDRWLSVLCGLQPPQCLEYLKIASYYGSSLPDWILQLRNLQRLVLTDCKL
CDSLPALGQLQQLKFLTINGCPKLRIIEWRTGATTKLVFPKLEQLDLRDMQALESLDRFK
HGDLLSLTKFHLENSPKLRSLPSGLGYCKVLTSMKIVGADSLQVIDNLPMLKELVVQDCR
ELVMISNLPVLQVLVVVDCSMLQDLRGVAGLRHVRLVDRVTKELPDWLTGHEAPLLQTFT
IVGTTELLRKLVPNSKGWSAIRNMDRVYANLPDGAPFLAYNKGRPDFQMIKTAVGPQLED
RPSAYIILRKLVRMASQTGLLDSLKRYFLPPLAIVLVLLLLATRDFTLIGILLAFFAAIA
CLAGFYYIYIQKASG

Transcript Sequence

Transcript ID

Os09t0313500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:8510839:8516543:-1 gene:Os09g0313500 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os09t0313500-01)
Sequence

ACATATACATCTTCGTGCGATTTATTTGAGGAAACCCAACGCTTAGGTGGTTGTGAAGCT
GCGCGGTCGCCGGGGCAAAGCGAACCACATGGCCGTACGACGAGCGCCGCTGCCGGTGGG
ACCGAGGGCCGCCGCCGACGGCAATCCGGCGCCGCCGGGTGAGTCGAGCAAAGGCCCCGG
CCTTGACGGCGAGTTCCGGCAGCTGGTGGACATCGCCGACGAGGGGGTCAAGCTGGTCAA
CGACGCCGAGCTGAGGCTGAAGAAGCGGGCGTGCGACAACCCCAAGGACCTCGCCGCGTG
GCTCCGGCGGCTCCAGAGCGCCAAGGAGGACCTGGACGACGCGCTCGATGAATTCAGAGC
TTCCATGGCGGCGCAGCGGCGGCGGCCGGAACAGGATCAGGAGAGGAAGAAATCGATTCG
CCATTGGTTCTCACGCTCATCAGCTAACCATGAGGTTGACAAGAAAATGAAAATCACTAC
TGAAAAGCTGAATAAGAAATTCCATGGGATCTTACAGAATGGTCGTGAACTTGGCCTTCA
ACCAATCAAATTGCAAAGACACAGTCGAATATCTGAATTTCCTGGGGATCTCTCACCCCA
GTACACTCTTGTAGGAGATATTGAACAAGAAAAGTTGAAGTTGATCAACAAATTGACTGG
CAGCGAAAGCACCAGTGCTGTCATTGCAATCTTTGGGTTGGGTGGAATTGGCAAGACTAT
GTTGGCACGAAAAGTACATGATGATCTCCTCACAGAAAGTGCATTCAGCACTGTTGTATG
GGTAAATGGCTCCAAATCTTTCACTAAAAAGAAATTGCTACGTGCAATTCTAAGTTCTTC
TGGTGGCAAGCCTGGAGAGGCAAAAAAAAAGAGCAATGAGCAAATTGAGGACATGTTGGT
TACAATACTTGGAGCAAAGAAATTCTTACTGGTACTTGATGATGTATGGGCTGACCAGAT
TCATCAGGATTTTCTAAAAGTTAGCTTGCAAGCACAGCAAGGAAGCCGAATTCTGTTGAC
TACCCAGGATGAGGGAGTTCTGAGGCAAATTGCTTCTGATGACATCCACAAAGTAAACAA
ATTGAGTTTCCCCGATTGTTGGTCTCTGCTCTGCAGTAGTGCTTGCCTGGATGAACAGGA
TTGCGACGCATTAACAGATATTGGTATAACAATTATCCAGAAATGTAACAAGGTTCCATT
GGCTATCAAAGTTTTGGGTGGTCTCCTAGGAACAAAGAACCCAAGAAGAGAGGAGTGGCA
GGAAGTGATCAGTGAGAGTGAAGGGTGGACTCTTGAGAACGTTCCTGATGGCATGGAGGA
AATATGTCTCCCCATCTACTTAGCCTATTACAGTCTGCCATATCATTTGAAATTATGTTT
TGATTACTGCTTGCAGCTCCCTGAAGGATTTGTTATTAGGCCACAAATTGTTACTCAGCT
ATGGATAGCAGAGGGCTTTATTCGAGAACAAGATAACCGCAACCCTGAAGATATCGCAGA
ACAGTATTACAAGGAATTGGTTCTAAGAAATCTTCTGCAGCCTGAGATTGGGTGCTTTGA
CATGTCGAAATGCACAGTGCATGATTGTGTAAAGTCCTTGCTGCAACCTTCAACTAAAGA
CAAGAAATCAACAGATAGCACCGAAGGGACAAAGTTTTTTAGAAGCTTCAGGACAGCTTT
TGTCTACAAGAATCCATCAGGAGATCGCGGCCTCAATTGGCTCATAAATTTGAGATCTCT
CATAAATTTGAGATCTCTTGACCTTACTGGTACTTGCATTAGGTACATACCGAAGTCACT
AGAACATCTACATCACCTTAGGCTCTTAAACCTCTCACTGACACAAGTTTTAGAGCTTCC
GGAATCTATTGAGAGCCTCAGCAACCTGCAGTTCTTGATACTTCGGTGTTGCTATTGGCT
CGAAACCCTGCCAGAGGAAATTAGTAATCTGGTCAGCTTGCGGAGCCTTGATTTGGAAGG
GACTACACCACATATAGTTCTGTCAAGATTATCAGCCCTGGAGCAGCTAACTGCACTGCA
TGGTTTCATAGTAGACCACAATGCGGCAGTACCCGACAATGATCATCAGAACGGATGGCC
TATGAAAGAGCTGAGTCCTTTGAACTCATTGCGGAGCCTGCAGATAATGGGCATCGATAG
AGTTCCAGATGAATCTAGGGCGCAAGAAGCTAACCTAGCAAGCAAGTCTCACCTCACACA
TCTTGAGTTATGTGGTAGTAGCACCAGTGATTCACAAGTCTTTGTACCAGAGGAAGAACA
AGATAGATGGCTCAGTGTGCTTTGCGGTCTCCAACCTCCACAATGCTTGGAATATCTCAA
AATAGCGAGCTATTATGGATCATCTCTTCCGGATTGGATATTGCAACTTCGAAACCTCCA
GCGGCTTGTGCTTACCGATTGCAAACTCTGTGATAGCCTCCCAGCATTGGGGCAGCTACA
ACAACTGAAGTTCCTCACAATCAATGGATGTCCTAAGTTACGCATCATCGAGTGGCGGAC
TGGTGCTACGACTAAACTGGTATTTCCAAAGCTAGAGCAGCTGGACCTCAGGGACATGCA
GGCCTTGGAATCATTGGATAGGTTTAAACATGGTGACCTGCTTTCCCTGACCAAATTTCA
CCTAGAGAACAGTCCCAAATTGAGATCCCTCCCATCTGGCCTTGGTTACTGCAAGGTACT
GACAAGTATGAAGATTGTTGGTGCTGATAGCCTCCAAGTGATTGACAACCTTCCTATGCT
CAAGGAATTGGTTGTCCAAGACTGCAGAGAACTTGTCATGATCTCAAATCTTCCAGTGCT
TCAGGTCCTGGTAGTCGTTGACTGCTCCATGCTGCAAGATTTGAGGGGAGTTGCAGGCCT
AAGGCATGTCCGCCTCGTGGACAGAGTGACGAAAGAACTTCCAGATTGGTTGACAGGCCA
TGAGGCTCCTCTGCTGCAAACATTCACCATAGTCGGCACGACAGAACTACTCAGGAAGTT
AGTTCCCAACAGCAAAGGCTGGTCGGCTATACGTAACATGGACAGAGTTTATGCAAATTT
GCCTGATGGGGCCCCGTTCTTGGCTTACAACAAGGGCAGACCTGATTTTCAAATGATTAA
GACAGCGGTTGGCCCTCAGTTGGAAGATCGTCCTTCTGCATATATTATCCTCAGAAAGCT
TGTCAGGATGGCCTCACAAACTGGCCTTCTGGATAGCTTAAAACGGTATTTCCTCCCTCC
ACTTGCCATTGTTCTTGTACTCTTGCTGCTGGCAACCAGAGACTTCACGCTCATTGGAAT
CTTGCTCGCCTTCTTTGCGGCAATAGCATGCCTTGCTGGGTTTTATTATATATATATTCA
GAAAGCTTCAGGGTGAATACTTAAACCATGCAGCTGGACGACCAATGGAGATTATAAGAT
AGAGAATTTTATGACTGGGAACATGTACTCTATATTCAGGCAATAAAATAAGCTTGATTT
GGAGGGACAACTGGTGGCAGAAATTATAACAAAAATATCATTTTGAGGTTAAGCAAACCA
AATCTTCTGTATGATGGAATGCTCTTCACATTAGATAACCGGCAGGCTTGTTTTTTTTCA
TTGGTACGACAGTATGCAGTTCTGTGTATTGTAACTGGTAAAATTTGATATACATCTACT
CTGTTTATGTTCTCCTTGTTCC