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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0308900-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:8152621:8158346:-1 gene:Os09g0308900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein. (Os09t0308900-01);Similar to Lipid phosphate phosphatase 3. (Os09t0308900-02);Similar to lipid phosphate phosphatase 3. (Os09t0308900-03)
Sequence

ATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCAAAGTGGCGAGACTT
CACATGTACGACTGGATAATACTTCTACTCCTTGCTGTTATAGATGGACTGTTGAACATA
ATTGAACCTTTTCACCGTTTCGTCGGGAGGGACATGATGACTGACTTGAGATATCCATTG
AAGGGCAATACTGTTCCCTTCTGGGCTGTTCCGCTCATTGGAATTGTATTGCCTTGTGCC
ATCTTTGGTGGAATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTG
GGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGATGGTGTG
GGTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGATGGAAAGGATGTTTATGAT
AATGTCACTACTGGTGTCATATGCCATGGAGAGAAGAGTGTCATCAAAGAAGGTCACAAG
AGCTTTCCAAGCGGGCACTCTTCATGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTAC
TTAGCTGGGAAGATCACAGTTTTTGATCGTAGAGGTCATGTTGCAAAGCTATGCATAGTA
TTTCTGCCTCTTCTTACTGCTGCACTTGTGGCTGTTTCTCGAGTGGATGACTACTGGCAT
CACTGGCAGGATGTATTTGCAGGCTCTCTGATAGGTTTGCAATTTCAATAA

Peptide Sequence

PEP ID

Os09t0308900-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:8152621:8158346:-1 gene:Os09g0308900 transcript:Os09t0308900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein. (Os09t0308900-01);Similar to Lipid phosphate phosphatase 3. (Os09t0308900-02);Similar to lipid phosphate phosphatase 3. (Os09t0308900-03)
Sequence

MADVLGCYTIKSHGTKVARLHMYDWIILLLLAVIDGLLNIIEPFHRFVGRDMMTDLRYPL
KGNTVPFWAVPLIGIVLPCAIFGGIYFKKKNFYDLHHGILGILYSVLITAVITDAIKDGV
GRPRPDFFWRCFPDGKDVYDNVTTGVICHGEKSVIKEGHKSFPSGHSSWSFAGLGFLAWY
LAGKITVFDRRGHVAKLCIVFLPLLTAALVAVSRVDDYWHHWQDVFAGSLIGLQFQ

Transcript Sequence

Transcript ID

Os09t0308900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:8152621:8158346:-1 gene:Os09g0308900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein. (Os09t0308900-01);Similar to Lipid phosphate phosphatase 3. (Os09t0308900-02);Similar to lipid phosphate phosphatase 3. (Os09t0308900-03)
Sequence

GCTGCCCTTTCACAACTGACAAGCTCTCTCTCTCTCTCTCTTCTCTCTTTGGGGGTGGTT
CTTGGTGCAGAGCCGATCTGCGGCGGCGGCGGGTGTGGGGGGCTCGAGGAGCCGCTGGTC
GGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTGACACAATGGCAGATGTCTTAGGATGT
TACACTATAAAGTCCCATGGAACCAAAGTGGCGAGACTTCACATGTACGACTGGATAATA
CTTCTACTCCTTGCTGTTATAGATGGACTGTTGAACATAATTGAACCTTTTCACCGTTTC
GTCGGGAGGGACATGATGACTGACTTGAGATATCCATTGAAGGGCAATACTGTTCCCTTC
TGGGCTGTTCCGCTCATTGGAATTGTATTGCCTTGTGCCATCTTTGGTGGAATTTACTTC
AAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGGGATCCTATACTCTGTGCTT
ATAACTGCGGTAATCACAGATGCAATTAAGGATGGTGTGGGTCGTCCACGCCCAGATTTT
TTCTGGCGCTGTTTCCCAGATGGAAAGGATGTTTATGATAATGTCACTACTGGTGTCATA
TGCCATGGAGAGAAGAGTGTCATCAAAGAAGGTCACAAGAGCTTTCCAAGCGGGCACTCT
TCATGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAGATCACAGTT
TTTGATCGTAGAGGTCATGTTGCAAAGCTATGCATAGTATTTCTGCCTCTTCTTACTGCT
GCACTTGTGGCTGTTTCTCGAGTGGATGACTACTGGCATCACTGGCAGGATGTATTTGCA
GGCTCTCTGATAGGTTTGCAATTTCAATAATATAACAATTATATGCAAGAGGTCCTAGCA
CTATCT