Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0306700-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:7914083:7925334:1 gene:Os09g0306700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCHROME AND FLOWERING TIME 1, Mediator 25_1 description:Phytochrome and flowering time 1 protein. (Os09t0306700-01)
Sequence	ATGGCGGCGGCGGCGGCCGAGAGGCAGCTGGTGGTGGCCGTGGAGGGGACGGCGGCGCTG GGGCCGTACTGGCCCGTCACCGTGGCGGACTACGTCGAGAAGATCGTGCGGAGTTTTTGT GCACATGAAATGGCAGGACAGAAGCTCGCAGGGACACCCCCTGAACTTGCATTAGTCGTC TTCCATACCCATGGTCCTTATAGCGCTTTTTGTGTGCAACGGAGTGGATGGACAAAAGAT ATGAATGTGTTTCTTTCATGGTTATCTGGAATATCATTTAGTGGTGGAGGCTTTAGTGAA GCTGCTATTTCTGAAGGTCTTGCTGAAGCATTGATGATACTCCAAGGCAGTTCTAGTAAC AGTCAGAATCATCAAAGCCATGAAGTACAAAAACATTGCATACTTGTTGCAGCAAGTAAT CCTTATCCACTGCCTACGCCTGTCTACCGCCCCCTTGTTCAAAGTAGCGATCACAAGGAG AACAATGATGGAGCAAAAGAATCTTGTCTTGCTGATGCTGAGACTGTTGCAAAATCATTT GCTCAGTGCTCCGTTTCATTGTCGGTGGTATCTCCTAAACAGCTTCCAACTCTGAAAGCA ATATACAATGCGGCAAAGAGGAATCCTCGAGCGGCTGACCCATCAGTGGATCATGCAAAA AATCCACATTTTCTTGTTTTGTTGTCTGACAATTTTTTGGAGGCTCGAACTGCTCTAAGT CGCCCTTTACCTGGCAACTTGGTCACAAATCACCCCATTACAAAAATGGATACAGCTGCA ACATCTGTGCCAGTACCAACTTCAAATGGCAACCCCTCAGTTAATGGACCTATGCTTACC CGCCAACCAAATGGTGTTGTTGCAAATATTAAAACGGAGCCAACAACTTTACCGCCCATG GTTTCTGCACCTGCTTTCTCGCATGTAACACCTGTTGCAAATGGTGTTTCACAAGGATTA TCATCAGTACAAAGTCCCTCACCGTCCCTTATTTCACAGGAAACTAATCTTGCAAATGAT AGTGTGCAAGAACATAAGCCTTTAATAAACCCTATCCAACAGTCAATTCGACCTGGTGGT CCAGCAAATGTCAGCATCCTCAACAATCTATCACAGCATCGGTCAGTGGCAACCATTATA TCAGGTGGAATGCCTGGCATCCCTATGTCTGGAACAGGACAGTCAATTGGTAGTCAACAA GTCGTACAAAACACTGCTTTTGGATCAAACACACCCATAACAGGCAATTCAAATATTGCT GTGTCATCTTCTTTGGGTGGCATCCAAAGCAATATCGGTATATCAGGGCCTCCTGTGACA CAGGGAGGTTCAATGGGTAGTACGCAATTGGGACAAGGTGGAATCAATACAAACCAAAAT ATGATAAGTAGCCTTGGGACAACAACTGTCTCTTCTGCACCTGCAATGATGCCAACACCA GGGATGGCTCAACAGGCAGGTGTAAATTCTCTTGGTGTGACCAACAGTTCTGCCATGAAC ATGCCTATAGTGCAGCATCCTAATGCGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAG CAGCAGCAGCCACCGCCGAAGTACGTCAAAATTTGGGAGGGAACTTTATCTGGGCAAAGG CAAGGACAACCTGTATTTATCTGTAAACTTGAAGGTTACAGGAGTGGAACAGCATCTGAA ACACTTGCAGCAGACTGGCCTGAAACAATGCAGATTGTGCGCCTTATAGCTCAGGAGCAT ATGAACAATAAACAATATGTTGGAAAAGCAGACTTTCTAGTATTTCGGACATTAAATCAG CACGGCTTCCTTGGGCAACTGCAGGAAAAGAAGCTGTGCGCAGTGATTCAACTGCCTTCG CAAACTTTGTTGTTGTCAGTGTCAGACAAAGCTGGGCGCCTCATTGGCATGCTGTTCCCT GGGGATATGGTGGTGTTTAAACCGCAGGTACCAACCCAGCAGCCACCAATGCAGCAACAA CAGTTACAACAGCAGCAGAACCAACTACAACAGCAGAATCAGCTCCACCAGCAGCACCAG CTGCAACCACAGAACCAGCTGCAACAGCAACACCAGCTGCAACAACAGTTACAACAGCAG CAACTACAACAACACATGCAACTGCAGACACAAGGCCTTCCGCTTCAGCAGCAGCAATCC CAAGGCCATCCGCTTCAGCAGCAGCAGATGCAGCAAATGCAGCAACAACAGCAGCAGCAG CAGATTCAGCAAATGCAGCAGCAGCAGCAGATGCAGCAGATGCAACAGCAGCAGCAGCAG CCCCAACAGCTTCAGCAGCAGCAGCAACCGCAGATGGTCGGCACAGGGATGGGGCAGCAG CAACCACAGATGGTCGGCACGGGGATGGGGCAGCAGCAACCGCAGATGGTCGGCGCAGGG ATGGGGCAGCAATACATGCAGGGGCACGGTAGGACGGTGCAGCAGATGATGCAAGGGAAG ATGGCGCCGCAGGGTCCAGGAAGCATGCCGGGTGCAGGGAGCATGCCTGGGGGTGGCTAC CTATCTTGA

Peptide Sequence

PEP ID	Os09t0306700-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:7914083:7925334:1 gene:Os09g0306700 transcript:Os09t0306700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCHROME AND FLOWERING TIME 1, Mediator 25_1 description:Phytochrome and flowering time 1 protein. (Os09t0306700-01)
Sequence	MAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVV FHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSN SQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSF AQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALS RPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPM VSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGG PANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIA VSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTP GMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQR QGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQ HGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQ QLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQS QGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQ QPQMVGTGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGY LS

Transcript Sequence

Transcript ID	Os09t0306700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:7914083:7925334:1 gene:Os09g0306700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCHROME AND FLOWERING TIME 1, Mediator 25_1 description:Phytochrome and flowering time 1 protein. (Os09t0306700-01)
Sequence	ATCTCTCTCTAACCTCACGAAACCTAACAAGAAGAAGAAGAAGAGAAATTCCGGCAAGGA AGGGAGGGAGGGAGAAGTCGTTGGTGCGGGGGAGATTGATTTCGCGGGAGGGAGGGGAGC TCGAGAGGCGGTGATTCGGGGAGTCGGCAGGGTGGCGCCGGGTGCGGCGGCGGCGGGGGC GGCCGTCGGGGGGATGGCGGCGGCGGCGGCCGAGAGGCAGCTGGTGGTGGCCGTGGAGGG GACGGCGGCGCTGGGGCCGTACTGGCCCGTCACCGTGGCGGACTACGTCGAGAAGATCGT GCGGAGTTTTTGTGCACATGAAATGGCAGGACAGAAGCTCGCAGGGACACCCCCTGAACT TGCATTAGTCGTCTTCCATACCCATGGTCCTTATAGCGCTTTTTGTGTGCAACGGAGTGG ATGGACAAAAGATATGAATGTGTTTCTTTCATGGTTATCTGGAATATCATTTAGTGGTGG AGGCTTTAGTGAAGCTGCTATTTCTGAAGGTCTTGCTGAAGCATTGATGATACTCCAAGG CAGTTCTAGTAACAGTCAGAATCATCAAAGCCATGAAGTACAAAAACATTGCATACTTGT TGCAGCAAGTAATCCTTATCCACTGCCTACGCCTGTCTACCGCCCCCTTGTTCAAAGTAG CGATCACAAGGAGAACAATGATGGAGCAAAAGAATCTTGTCTTGCTGATGCTGAGACTGT TGCAAAATCATTTGCTCAGTGCTCCGTTTCATTGTCGGTGGTATCTCCTAAACAGCTTCC AACTCTGAAAGCAATATACAATGCGGCAAAGAGGAATCCTCGAGCGGCTGACCCATCAGT GGATCATGCAAAAAATCCACATTTTCTTGTTTTGTTGTCTGACAATTTTTTGGAGGCTCG AACTGCTCTAAGTCGCCCTTTACCTGGCAACTTGGTCACAAATCACCCCATTACAAAAAT GGATACAGCTGCAACATCTGTGCCAGTACCAACTTCAAATGGCAACCCCTCAGTTAATGG ACCTATGCTTACCCGCCAACCAAATGGTGTTGTTGCAAATATTAAAACGGAGCCAACAAC TTTACCGCCCATGGTTTCTGCACCTGCTTTCTCGCATGTAACACCTGTTGCAAATGGTGT TTCACAAGGATTATCATCAGTACAAAGTCCCTCACCGTCCCTTATTTCACAGGAAACTAA TCTTGCAAATGATAGTGTGCAAGAACATAAGCCTTTAATAAACCCTATCCAACAGTCAAT TCGACCTGGTGGTCCAGCAAATGTCAGCATCCTCAACAATCTATCACAGCATCGGTCAGT GGCAACCATTATATCAGGTGGAATGCCTGGCATCCCTATGTCTGGAACAGGACAGTCAAT TGGTAGTCAACAAGTCGTACAAAACACTGCTTTTGGATCAAACACACCCATAACAGGCAA TTCAAATATTGCTGTGTCATCTTCTTTGGGTGGCATCCAAAGCAATATCGGTATATCAGG GCCTCCTGTGACACAGGGAGGTTCAATGGGTAGTACGCAATTGGGACAAGGTGGAATCAA TACAAACCAAAATATGATAAGTAGCCTTGGGACAACAACTGTCTCTTCTGCACCTGCAAT GATGCCAACACCAGGGATGGCTCAACAGGCAGGTGTAAATTCTCTTGGTGTGACCAACAG TTCTGCCATGAACATGCCTATAGTGCAGCATCCTAATGCGCAGCAGCAGCAACAGCAACA GCAACAGCAGCAGCAGCAGCAGCCACCGCCGAAGTACGTCAAAATTTGGGAGGGAACTTT ATCTGGGCAAAGGCAAGGACAACCTGTATTTATCTGTAAACTTGAAGGTTACAGGAGTGG AACAGCATCTGAAACACTTGCAGCAGACTGGCCTGAAACAATGCAGATTGTGCGCCTTAT AGCTCAGGAGCATATGAACAATAAACAATATGTTGGAAAAGCAGACTTTCTAGTATTTCG GACATTAAATCAGCACGGCTTCCTTGGGCAACTGCAGGAAAAGAAGCTGTGCGCAGTGAT TCAACTGCCTTCGCAAACTTTGTTGTTGTCAGTGTCAGACAAAGCTGGGCGCCTCATTGG CATGCTGTTCCCTGGGGATATGGTGGTGTTTAAACCGCAGGTACCAACCCAGCAGCCACC AATGCAGCAACAACAGTTACAACAGCAGCAGAACCAACTACAACAGCAGAATCAGCTCCA CCAGCAGCACCAGCTGCAACCACAGAACCAGCTGCAACAGCAACACCAGCTGCAACAACA GTTACAACAGCAGCAACTACAACAACACATGCAACTGCAGACACAAGGCCTTCCGCTTCA GCAGCAGCAATCCCAAGGCCATCCGCTTCAGCAGCAGCAGATGCAGCAAATGCAGCAACA ACAGCAGCAGCAGCAGATTCAGCAAATGCAGCAGCAGCAGCAGATGCAGCAGATGCAACA GCAGCAGCAGCAGCCCCAACAGCTTCAGCAGCAGCAGCAACCGCAGATGGTCGGCACAGG GATGGGGCAGCAGCAACCACAGATGGTCGGCACGGGGATGGGGCAGCAGCAACCGCAGAT GGTCGGCGCAGGGATGGGGCAGCAATACATGCAGGGGCACGGTAGGACGGTGCAGCAGAT GATGCAAGGGAAGATGGCGCCGCAGGGTCCAGGAAGCATGCCGGGTGCAGGGAGCATGCC TGGGGGTGGCTACCTATCTTGAAGCACCTGATAGCCTGAATGCCAGAAGAATAAGTGGGC AATTTAACCCAGCCCTTTTGGCTGCACAAGCTATATAGCTCATGGATTACTTGCCCAGCA TCCTAGGTAATTTTCCCACCTTAGTGTGGGATACATAGTAGGTGTTCTCAGTAGTTTGGT TTTGGCTGTGATGTTTTACCTGTAGATAGCGTCTTGGAGCCTACACGGCCTCATGTTGTG TTTTGTGTAGCTTCTTTTGATGTCACTGCCTTATGCTTAGCTTGTAGCTGCTGGAAGCAG ATCAAATTTAAAGGATTAATTAATTAATAGTAACTCTGTTT