Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0284400-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:6246356:6249737:-1 gene:Os09g0284400 gene_biotype:protein_coding transcript_biotype:protein_coding description:GrpE nucleotide exchange factor domain containing protein. (Os09t0284400-01)
Sequence

ATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCGTCGAGGCAATGCGTCGCCGCGGTGGCG
GCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCGGCGGCGCTGTCGCTGCCCGTGGTGACC
GCGGCGAAGGCGGCGGCTGCGGAGCCGTGGCTCGGGGTCCCATATATGTTGAATCAGCCC
TTGAGATACTCAACCACCATTTTTCAACGTTTTGGATTTTCATCCACTTCCCCGGAACTA
AGTGATAAGGAGGAAAACCAACGCAAGGACCAGGAGAATTCCACAAATGTGTCAAATGAA
GGCACTGAAGACGTTGATTTGTCAAAGGAGGATCTGGTGCAGCTAGTTCTTGAGAAGGAT
GGATTGTTGAAGTCAAAAGATGAAGAAATCAATGATATGAAGGACAAGGTTTTGCGAAGT
TATGCAGAAATGGAAAATGTCATAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAG
TATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCA
TCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCT
GTTCCACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAG
GTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGT
AGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCT
GTTGTAAAGGTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTT
ACAGAGGGAGGCCCCACGACCACGGAGGAGGCAGCAGAAAATTCTGAGCAGAAATCGAGT
GAGGTTTAA

Peptide Sequence

PEP ID

Os09t0284400-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:6246356:6249737:-1 gene:Os09g0284400 transcript:Os09t0284400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:GrpE nucleotide exchange factor domain containing protein. (Os09t0284400-01)
Sequence

MVAASRLLARASRQCVAAVAASAARRRRCPAAALSLPVVTAAKAAAAEPWLGVPYMLNQP
LRYSTTIFQRFGFSSTSPELSDKEENQRKDQENSTNVSNEGTEDVDLSKEDLVQLVLEKD
GLLKSKDEEINDMKDKVLRSYAEMENVIARTKRESENSKKYAVQNFSKSLLDVADNLTRA
SSVVKESFSKIDTSKDSTGAVPLLKTLLEGVDMTDKQLGEVFKKFGVEKFDPLNEKFDPS
RHCAIFQIPDPSKPSGTVASVVKVGYMLHDRVLRPAEVGVTEGGPTTTEEAAENSEQKSS
EV

Transcript Sequence

Transcript ID

Os09t0284400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:6246356:6249737:-1 gene:Os09g0284400 gene_biotype:protein_coding transcript_biotype:protein_coding description:GrpE nucleotide exchange factor domain containing protein. (Os09t0284400-01)
Sequence

AAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTCCGATCCTCCCCCCCTCGACTCGGCCGC
GGGCGTACGTAGAGGGGGACCGACCAGATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCG
TCGAGGCAATGCGTCGCCGCGGTGGCGGCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCG
GCGGCGCTGTCGCTGCCCGTGGTGACCGCGGCGAAGGCGGCGGCTGCGGAGCCGTGGCTC
GGGGTCCCATATATGTTGAATCAGCCCTTGAGATACTCAACCACCATTTTTCAACGTTTT
GGATTTTCATCCACTTCCCCGGAACTAAGTGATAAGGAGGAAAACCAACGCAAGGACCAG
GAGAATTCCACAAATGTGTCAAATGAAGGCACTGAAGACGTTGATTTGTCAAAGGAGGAT
CTGGTGCAGCTAGTTCTTGAGAAGGATGGATTGTTGAAGTCAAAAGATGAAGAAATCAAT
GATATGAAGGACAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGCTAGGACA
AAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTA
GATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATA
GATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGTGTG
GACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGAT
CCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCC
TCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGCTACATGCTACATGACCGT
GTTCTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGACCACGGAGGAGGCA
GCAGAAAATTCTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACTTAA
CGAGATAGTTGGAACGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTAAGAT
AAGAGGAGCGTTATTTTTTGTTCTAACCAGCACAAGCTATTGCACTGTAAGCAATGACAA
TTGTGTTTTTGC