Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0281900-02
CDS Infomation	cds chromosome:IRGSP-1.0:9:6037941:6042988:-1 gene:Os09g0281900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 14_2 description:Thyroid hormone receptor-associated protein complex component TRAP170- like protein. (Os09t0281900-01);Similar to SWP (STRUWWELPETER). (Os09t0281900-02)
Sequence	ATGGGCTCTGATGGTGCATCTAGAAAGCGTTCTATTTCAGATTTATTTCTGAACCTCCCT TCATTGCAAGGATTGAAACCCAGTAGCCCAAGGAAGCGAAGAAGAATATCAGAATCAATG GAGAGTTGGTCTCCTTTGCAAGCATATTCATCAGACTCACAATCAAGAACAAGCCTCACC TACGGAAATATTCTGGCTGAAAGAAATAATTGTGTCCCAGCAACTACATATGCTTCGGTG CTACTACATGTCATAAGACACTGTTCATTGTCCATTAAACATGCTCAAATAACTGCCCAG ATGGATTCTCTTGCCATTCCATATGTTGAAGAAGTGGGCTTACGATCACCATCCTCTAAT CTTTGGCTAAGGTTACCTTTTGCTCGGGATGATTCTTGGAAACACATATGCTTACGCCTC GGCAAGGCTGGAAGTATGTCTTGGGATGTTAGGATAAACGATCCACATTTTAGGGAACTC TGGGAGCTAAGTACAGGAAGCACCACAACCTCATGGGGTGTTGGTGTTCGTGTCGCAAAC ACCTCTGAGATGGATTCGCATATCTCTTTTGATGCAGAAGGTGTTATTTTAACTTACAGC AATGTTGAACCAGACAGTGTTCAGAAGCTTGTGTCAGATCTACGAAGGCTTGCAAATGCC CGTTCATTTGCCCGTGGAATGAGGAGATTGATTGGTGTCAAACTTAATGACAAGCTAGAT GATGATCAGACATCTACGGATATAAAGTCGCAGCCTGTTAATAAGGGTAATAGTGATGCT GCAGACAGGCTATCTGAACAAATGAGAAAGACTTTCAGGATTGAAGCTGTTGGCTTAATG AGCTTGTGGTTCAGTTATGGCACAATGCCTATGGTACACTTTGTTGTTGAGTGGGAAAGT GCTAAGGGAGGCTGCACAATGCATGTTTCTCCTGATCAGCTTTGGCCACACACAAAGTTT TTGGAGGATTTCGTGAACGGTGGTGAGGTAGCATCCTTCCTGGACTGCATTCGGCTGACA GCAGGGCCTTTGCTTGCCCTTGGGGGTGCAATTCGTCCAGCAAGAATGCCTGTAACGGTT TCTTCTGGATACAACTCCATGCCAAAGCAGATGAACAACATCCCCACCCAGGGACCATTA GCAAATGGTTCATCATCAACAACCATGCATCACGCACCTTCCCCCGCAAATGTTGCTGCC ACCCATTTGGGAAGTCATAATCTCCACACTGCTGCGATGCTTTCCGCTGCTGGACGGGGT GGGCCTGGACTTGTTCCTAGTTCTTTGCTGCCCTTTGATGTTTCTGTTGTGCTCCGTGGG CCATACTGGATACGCATTATATATCGGAAGAAATTTTCTGTTGACATGCGCTGTTTCGCT GGGGATCAGGTTTGGCTACAACCAGCAACTCCTCCTAAAGGAGGACCTCTGGTTGGTGGA TCGTTGCCGTGCCCACAATTTCGACCATTCATAATGGAACATGTTGCTCAGGGTCTAAAT GCTCTTGAACCCAGTTTCATGAATGCTACACAGGCCGGTGCGCATTTAAATAGCAGTGCT GGAACTCTGCAACCTGCACCCAATGCAAATCGTGTAAACGCGACTCAAGGTATTGGTATG TCCAGGCCTGCTTCTGGAGTTGCTAACCATGTAGCAGCCAATTTGAGTCGAGCAGGTAAT GCCATGTTGGCCTCTTCAGGACTTGCTTCAGGGATTGGTGGGGCCTCTGTGCGACTAACA TCTGGAGCTAACCTCCCTGTTCATGTGAAAGGAGAGCTGAATACAGCTTTCATTGGGCTT GGGGATGATGGTGGCTACGGTGGTGGTTGGGTTCCTTTGGCAGCTCTCAAGAAGGTTTTA AGAGGGATCCTCAAGTACCTTGGAGTTCTATGGTTGTTTGCACAATTGCCTGAACTTCTG AAAGAGATACTGGGGTCGATTTTGAAGGAAAATGAGGGTGCTCTCTTGAATTTGGATCAA GAGCAACCTGCACTCCGGTTCTATGTGGGAGGTTATGTATTTGCAGTTAGTGTTCATCGG GTTCAATTGCTTCTACAAGTTTTAAGCGTCAAGCGATTCCATCACCAGCAACAGCAGCAG CAAGCTCAGAACAGTGCACAGGAAGAGCTAGCTCCACCTGAAATCAACGAGATATGTGAT TATTTCAGCAGGCGTGTTGCCTCTGAACCATATGATGCTTCCAGAGTTGCTTCATTTATC ACTTTGCTTACACTACCGATTTCAGTGCTGCGAGAATTTTTAAAACTAATTGCTTGGAAG AAAGGTTTCTCCCAGGCTCATGGGGACATGGCCACTGCTCAGAGAGCCCGGATTGAGATT TGTCTGGAAAATCATTCAGGGTCAGTTTCAGATGATATCACAGAAAGCACTTTGGCTAAG AGCAATGTTAAGTATGATAGAGCCCACAGTTCTCTAGAGTTTGCTCTGACCTTTGTACTT GATCATGCTCTCATTCCTCATATGAATGTAGCTGGCGGAGCTGCCTGGCTTCCGTATTGT GTATCCGTACGACTAAAGTATTCTTTTGGGGAAAGCAACCATATAGCATACCTTGCAATG GACGGTAGCCATGGTGGCAGAGCTTGCTGGTTGCAATACGAGGACTGGGAAAGATGTAAG CAGAAGGTCGCCAGGGCAGTGGAGACTGTGAATGGCTCTGTTGCGGTTGGAGAATCAGGC CAAGGAAGATTGCGAATGGTCGCCGAGATGATCCAAAAGCAACTTCAGCTCTGTCTTCAG CAGCTGAGAGATGGTCCTCTTTCTGCTGGCTCAACTGCATCATGA

Peptide Sequence

PEP ID	Os09t0281900-02
PEP Infomation	pep chromosome:IRGSP-1.0:9:6037941:6042988:-1 gene:Os09g0281900 transcript:Os09t0281900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 14_2 description:Thyroid hormone receptor-associated protein complex component TRAP170- like protein. (Os09t0281900-01);Similar to SWP (STRUWWELPETER). (Os09t0281900-02)
Sequence	MGSDGASRKRSISDLFLNLPSLQGLKPSSPRKRRRISESMESWSPLQAYSSDSQSRTSLT YGNILAERNNCVPATTYASVLLHVIRHCSLSIKHAQITAQMDSLAIPYVEEVGLRSPSSN LWLRLPFARDDSWKHICLRLGKAGSMSWDVRINDPHFRELWELSTGSTTTSWGVGVRVAN TSEMDSHISFDAEGVILTYSNVEPDSVQKLVSDLRRLANARSFARGMRRLIGVKLNDKLD DDQTSTDIKSQPVNKGNSDAADRLSEQMRKTFRIEAVGLMSLWFSYGTMPMVHFVVEWES AKGGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTV SSGYNSMPKQMNNIPTQGPLANGSSSTTMHHAPSPANVAATHLGSHNLHTAAMLSAAGRG GPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPLVGG SLPCPQFRPFIMEHVAQGLNALEPSFMNATQAGAHLNSSAGTLQPAPNANRVNATQGIGM SRPASGVANHVAANLSRAGNAMLASSGLASGIGGASVRLTSGANLPVHVKGELNTAFIGL GDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKENEGALLNLDQ EQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQNSAQEELAPPEINEICD YFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGFSQAHGDMATAQRARIEI CLENHSGSVSDDITESTLAKSNVKYDRAHSSLEFALTFVLDHALIPHMNVAGGAAWLPYC VSVRLKYSFGESNHIAYLAMDGSHGGRACWLQYEDWERCKQKVARAVETVNGSVAVGESG QGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS

Transcript Sequence

Transcript ID	Os09t0281900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:6037941:6042988:-1 gene:Os09g0281900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Mediator 14_2 description:Thyroid hormone receptor-associated protein complex component TRAP170- like protein. (Os09t0281900-01);Similar to SWP (STRUWWELPETER). (Os09t0281900-02)
Sequence	ACACGGGGCTCTTGCTGTTCCAAACCATTCTTTGCCGCAAACTACTTTGCAGTCTACCTC TCATCCAGGTTCTCTTTCTGTTGGTTTTCAAGGAGTAGGTACTAGAGCTAATGCATCAAT TGAAGGGGCCTCATCAGCTTACAGTGGATCAAAATTTTCTCCCGGGGTTGGTTTGAACAG TTATTTACCAAGTAATTTGAGACATGTACAAAGTACAAACGCCTTTTCCTCAAGCACTGT AACAAAATCATCTTCAATCAAGTTGCCAAGTTCTAATTCTAATCATGAACTGAGCTCATT GAGCTCTCCAACTGAACATGTGATTGCTGATGGAAGTAAATCACTTCAGCTCGTCCCTGC AAGCAAGATTAATGGATCAATCAACCTTATCACTATGGGCTCTGATGGTGCATCTAGAAA GCGTTCTATTTCAGATTTATTTCTGAACCTCCCTTCATTGCAAGGATTGAAACCCAGTAG CCCAAGGAAGCGAAGAAGAATATCAGAATCAATGGAGAGTTGGTCTCCTTTGCAAGCATA TTCATCAGACTCACAATCAAGAACAAGCCTCACCTACGGAAATATTCTGGCTGAAAGAAA TAATTGTGTCCCAGCAACTACATATGCTTCGGTGCTACTACATGTCATAAGACACTGTTC ATTGTCCATTAAACATGCTCAAATAACTGCCCAGATGGATTCTCTTGCCATTCCATATGT TGAAGAAGTGGGCTTACGATCACCATCCTCTAATCTTTGGCTAAGGTTACCTTTTGCTCG GGATGATTCTTGGAAACACATATGCTTACGCCTCGGCAAGGCTGGAAGTATGTCTTGGGA TGTTAGGATAAACGATCCACATTTTAGGGAACTCTGGGAGCTAAGTACAGGAAGCACCAC AACCTCATGGGGTGTTGGTGTTCGTGTCGCAAACACCTCTGAGATGGATTCGCATATCTC TTTTGATGCAGAAGGTGTTATTTTAACTTACAGCAATGTTGAACCAGACAGTGTTCAGAA GCTTGTGTCAGATCTACGAAGGCTTGCAAATGCCCGTTCATTTGCCCGTGGAATGAGGAG ATTGATTGGTGTCAAACTTAATGACAAGCTAGATGATGATCAGACATCTACGGATATAAA GTCGCAGCCTGTTAATAAGGGTAATAGTGATGCTGCAGACAGGCTATCTGAACAAATGAG AAAGACTTTCAGGATTGAAGCTGTTGGCTTAATGAGCTTGTGGTTCAGTTATGGCACAAT GCCTATGGTACACTTTGTTGTTGAGTGGGAAAGTGCTAAGGGAGGCTGCACAATGCATGT TTCTCCTGATCAGCTTTGGCCACACACAAAGTTTTTGGAGGATTTCGTGAACGGTGGTGA GGTAGCATCCTTCCTGGACTGCATTCGGCTGACAGCAGGGCCTTTGCTTGCCCTTGGGGG TGCAATTCGTCCAGCAAGAATGCCTGTAACGGTTTCTTCTGGATACAACTCCATGCCAAA GCAGATGAACAACATCCCCACCCAGGGACCATTAGCAAATGGTTCATCATCAACAACCAT GCATCACGCACCTTCCCCCGCAAATGTTGCTGCCACCCATTTGGGAAGTCATAATCTCCA CACTGCTGCGATGCTTTCCGCTGCTGGACGGGGTGGGCCTGGACTTGTTCCTAGTTCTTT GCTGCCCTTTGATGTTTCTGTTGTGCTCCGTGGGCCATACTGGATACGCATTATATATCG GAAGAAATTTTCTGTTGACATGCGCTGTTTCGCTGGGGATCAGGTTTGGCTACAACCAGC AACTCCTCCTAAAGGAGGACCTCTGGTTGGTGGATCGTTGCCGTGCCCACAATTTCGACC ATTCATAATGGAACATGTTGCTCAGGGTCTAAATGCTCTTGAACCCAGTTTCATGAATGC TACACAGGCCGGTGCGCATTTAAATAGCAGTGCTGGAACTCTGCAACCTGCACCCAATGC AAATCGTGTAAACGCGACTCAAGGTATTGGTATGTCCAGGCCTGCTTCTGGAGTTGCTAA CCATGTAGCAGCCAATTTGAGTCGAGCAGGTAATGCCATGTTGGCCTCTTCAGGACTTGC TTCAGGGATTGGTGGGGCCTCTGTGCGACTAACATCTGGAGCTAACCTCCCTGTTCATGT GAAAGGAGAGCTGAATACAGCTTTCATTGGGCTTGGGGATGATGGTGGCTACGGTGGTGG TTGGGTTCCTTTGGCAGCTCTCAAGAAGGTTTTAAGAGGGATCCTCAAGTACCTTGGAGT TCTATGGTTGTTTGCACAATTGCCTGAACTTCTGAAAGAGATACTGGGGTCGATTTTGAA GGAAAATGAGGGTGCTCTCTTGAATTTGGATCAAGAGCAACCTGCACTCCGGTTCTATGT GGGAGGTTATGTATTTGCAGTTAGTGTTCATCGGGTTCAATTGCTTCTACAAGTTTTAAG CGTCAAGCGATTCCATCACCAGCAACAGCAGCAGCAAGCTCAGAACAGTGCACAGGAAGA GCTAGCTCCACCTGAAATCAACGAGATATGTGATTATTTCAGCAGGCGTGTTGCCTCTGA ACCATATGATGCTTCCAGAGTTGCTTCATTTATCACTTTGCTTACACTACCGATTTCAGT GCTGCGAGAATTTTTAAAACTAATTGCTTGGAAGAAAGGTTTCTCCCAGGCTCATGGGGA CATGGCCACTGCTCAGAGAGCCCGGATTGAGATTTGTCTGGAAAATCATTCAGGGTCAGT TTCAGATGATATCACAGAAAGCACTTTGGCTAAGAGCAATGTTAAGTATGATAGAGCCCA CAGTTCTCTAGAGTTTGCTCTGACCTTTGTACTTGATCATGCTCTCATTCCTCATATGAA TGTAGCTGGCGGAGCTGCCTGGCTTCCGTATTGTGTATCCGTACGACTAAAGTATTCTTT TGGGGAAAGCAACCATATAGCATACCTTGCAATGGACGGTAGCCATGGTGGCAGAGCTTG CTGGTTGCAATACGAGGACTGGGAAAGATGTAAGCAGAAGGTCGCCAGGGCAGTGGAGAC TGTGAATGGCTCTGTTGCGGTTGGAGAATCAGGCCAAGGAAGATTGCGAATGGTCGCCGA GATGATCCAAAAGCAACTTCAGCTCTGTCTTCAGCAGCTGAGAGATGGTCCTCTTTCTGC TGGCTCAACTGCATCATGAGCAGACAAGTCTGTTGGGGGAATTTAGTGGCCAGGTTAGAG AATTTTGTCGCAACAGTTTGTCTCATTGAGTGCTGGGGATAGTCTCAGCGCCAAAGGCTC TTATTGTTATGAATGTTTTGTACAGTAAAGGTGTGAAGCCCTTGTGTTGCTTAACCTAGC CCCTTCCTGTAACATAGAAAATGTGGGTAATAATGCACCTAGGTGTGGTTGCTCATGGAC TTCAGCAGTGCAAATTCAGCATAGATCTGTCCATACAGAATTTGTTATTCCTTTTATCAG AAGGGAGCTGGTGTTTTTGTTGCTGTTAATTTAGACATTTTATCAGGTTTGAGCAGTGTA GTGTACATTATATATAATATACTGGACTTGGACT