Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0248900-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:3719068:3730935:-1 gene:Os09g0248900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Myb/SANT-like domain domain containing protein. (Os09t0248900-01)
Sequence

ATGGATATAGGAGGAAGCAACAAACATGGCAAGGGAAAAAGTAAGGCACGCAAAGGAGTT
GGGGGATCAGGTGTGAGGTCAAAACCCATAAATTGGCCACCAGCATTCTCTGAATTTCTT
CTTGACTGGTACATTGAAAAGAAGTTAGAGCTGCCACCAAAGGGAGTGATCAAGAAGATG
CATCACACTGCTTGCACATCAGCTATTAATGCAAAGTATGGCAGTACTTACAATGTTGAT
CAGGTTCAACGACACTATAGGTGCCATAAAGAGACTTGGGCACTTGTAGCTCGCCATCTA
AATGAGAGTGGTGGTGGCTGGGATGAGACAAACAAAATGTTGTCTCTCTCCCAATCTACC
TTGGATAGCCTATCGATTAATGACCGTGGAATTCTTTCAAAGCCTATTCAGTTCTTCGAT
AAGCTGCAAGAGTTGTTTAGTGGTTCCTCGGCTGATGGAGCGTTTATGGAAGATCCTTCA
AGTGTTGCTGATTTTGATGATGAAGCTGATGAACTTGATAATTTCAATGATATGTCAACC
TATGCTGAAACAAAATATCCACAAGGGGAAGACTCGGACAAATTAGAGGCAGACAGTGAT
GATTGCAAGGAGGTGGCAGCCCTTAATGCAGCAACTGCAGCCCTTAATGCAGCAACTAGT
CAAGTTTCATCTTCTCATACCAGTGGTCTGAAGCCAAACAAGAAGAGTTTCAAAAAGTGT
GGGAAGCCAAAGACCTTGCCTCAATCACATAATGATAAGGGTAAGCTTAAGGCAAAGTCA
TCATCTGGATTGCATGATGATGATGATATTGATGTGCTGATCACTAGTACCTTGGTTGGA
ATCAAAGATAACCTTGCCAAACCAATACAGACTGCAGCCCCTCAAGATCCAAATGCCCCT
CTATGGGACATGCTCAAGAAGATTGCCTTAGAACCTGAAGATAAAATGAGAGTTGGACTA
CACCTTTGCAAGCCAGAATTTCAAGCTCATCGCAGTTTTCTTATTAGCATGGGTCAAGAA
TATCTTGAACGTTGGGTTTACAAGTTCTTATCTGGTGATGATACAGGCCTCTAG

Peptide Sequence

PEP ID

Os09t0248900-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:3719068:3730935:-1 gene:Os09g0248900 transcript:Os09t0248900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Myb/SANT-like domain domain containing protein. (Os09t0248900-01)
Sequence

MDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDWYIEKKLELPPKGVIKKM
HHTACTSAINAKYGSTYNVDQVQRHYRCHKETWALVARHLNESGGGWDETNKMLSLSQST
LDSLSINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDNFNDMST
YAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKC
GKPKTLPQSHNDKGKLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAP
LWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTGL

Transcript Sequence

Transcript ID

Os09t0248900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:3719068:3730935:-1 gene:Os09g0248900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Myb/SANT-like domain domain containing protein. (Os09t0248900-01)
Sequence

AGAGCCTTCCGTCGTGTCAGTGTGCCACCCAAACTCACCATGGCTTCTGACTTCAAGGCA
ATCCCCTTGATCGACATTAGCCCACTTGTTGAAAAGATCGATGATCCAAATATGGCCAAT
GACAAGGATTTGCTGCAAGTTGTCCGATTGTTGGACGATGCATGTAGGGAGGCTGGATTC
TTTTATGTGAAAGGCCATGGGATTGCTGAGTCGCTAATGAAGGAAGTTAGGGACGTCACA
CACAAGTTCTTCCAACTTCCTTATGAAGAAAAACTAAAGATTAAAATGACACCTCAGAAT
GGATATAGAGGATACCAAAGACTGGGCGAAAATATTACCAACGGTAAACCTGACATGCAG
GAAGCAATTGATTATTATGCGCCTATTGAACCTGGTAAATATGGAGATCTTGCCAAACCA
ATGGAAGGAACTAATTTGTGGCCAAAATATCCATCAAATTTTGATGCACTACTAAAAAAC
TATATCAGCCTTCTAAGAGATCTTTCCAGAAAGATCATGCAAGGTATAGCCTTGGCATTG
GGTGGGCCAGTTGATGCTTTTGAAGGTAGAACCGCAGGAGATCCTTTTTGGGTTTGCAGG
TTGATTGGTTATCCTGTATCAACCGATATTCTAGAAGAGCATCGCACTGACACTGGCTGT
GGAGCTCACACAGACTATGGCCTTCTGACATTGGTTAACCAAGATGATGACATATGTGCC
CTTGAGGTCAAAAACCAATCAGGTGAGTGGATTTATGCCAAACCAATCCCGGGAACCTTC
GTCTGCAACATTGGTGACATGCTGAAGGTTTGGTCAAATGGAATATATCAACCAACACTT
CATCGAGTTGTTAACAATTCCCCTCGTTACCGTGTATCTGTTGCCTTTTTCTATGAGTCA
AACTTCGATGCTGCCATAGAGCCTGTTGAGTTCTGCCGGGAGAGAACAGGTGGTGTCGCC
AAGTATGAAAAGGTTGTATACGGGGAGCATTTAATTAAAAAAGTCTTGAATAATTTCATC
AAATAAATTTGCGGAACAGAAAAAACAAACGTGTATGCACTCCAAGATCATATCACATCA
TTTATCAATAATACTGTTTGTGAAATTTTATTGTAGCACTTGTTGCATTTCTATAATTTG
CTACATTTTAGGGGCTATCTTAACACTAAAGATAGAGTTCCTTTATGGTTCACCGTACTA
TGCTATAGTAGTGGGTTGTACTAGTGATCCAACGATTCGTTGGCATAATAAGCCTGGCCT
AAGGTCATGCCTGTAACTCGCCTGGCATCTGTTTGGTTGCTACCCTGAGGATTCTAGCCT
GATAAATCTTGCCTGAGTGTACTCGCCTGAGTCAGGCGTACAAAATGGGTGGCCTGAGCA
TTTCGCTCCACCTGCCTGAGTAAAATCACCGCTCTTCTATACAGTAGTGAAAACGAGACC
ACTTCTTCCTCCTCCTCACTGCTAGCCTAGGGTTCTTGCGGAGACCAGTTCCCATCGATT
CTTCCATGGCTCCAGCAGCGGTGACCAAGGAACTTGCAGATCTGGTGGCCAGTTGTTTCT
TTTTCCAGTAAAAGTCCTGCATTTGGTGATCTGTTAGAGCGTAGCTCTGACCGTGAGAGC
TAGCAGATTGCCAAGCCCCCACAATCTTTGCCACGATTTTCTGCAGCAAGTTCATAACAT
GGATATAGGAGGAAGCAACAAACATGGCAAGGGAAAAAGTAAGGCACGCAAAGGAGTTGG
GGGATCAGGTGTGAGGTCAAAACCCATAAATTGGCCACCAGCATTCTCTGAATTTCTTCT
TGACTGGTACATTGAAAAGAAGTTAGAGCTGCCACCAAAGGGAGTGATCAAGAAGATGCA
TCACACTGCTTGCACATCAGCTATTAATGCAAAGTATGGCAGTACTTACAATGTTGATCA
GGTTCAACGACACTATAGGTGCCATAAAGAGACTTGGGCACTTGTAGCTCGCCATCTAAA
TGAGAGTGGTGGTGGCTGGGATGAGACAAACAAAATGTTGTCTCTCTCCCAATCTACCTT
GGATAGCCTATCGATTAATGACCGTGGAATTCTTTCAAAGCCTATTCAGTTCTTCGATAA
GCTGCAAGAGTTGTTTAGTGGTTCCTCGGCTGATGGAGCGTTTATGGAAGATCCTTCAAG
TGTTGCTGATTTTGATGATGAAGCTGATGAACTTGATAATTTCAATGATATGTCAACCTA
TGCTGAAACAAAATATCCACAAGGGGAAGACTCGGACAAATTAGAGGCAGACAGTGATGA
TTGCAAGGAGGTGGCAGCCCTTAATGCAGCAACTGCAGCCCTTAATGCAGCAACTAGTCA
AGTTTCATCTTCTCATACCAGTGGTCTGAAGCCAAACAAGAAGAGTTTCAAAAAGTGTGG
GAAGCCAAAGACCTTGCCTCAATCACATAATGATAAGGGTAAGCTTAAGGCAAAGTCATC
ATCTGGATTGCATGATGATGATGATATTGATGTGCTGATCACTAGTACCTTGGTTGGAAT
CAAAGATAACCTTGCCAAACCAATACAGACTGCAGCCCCTCAAGATCCAAATGCCCCTCT
ATGGGACATGCTCAAGAAGATTGCCTTAGAACCTGAAGATAAAATGAGAGTTGGACTACA
CCTTTGCAAGCCAGAATTTCAAGCTCATCGCAGTTTTCTTATTAGCATGGGTCAAGAATA
TCTTGAACGTTGGGTTTACAAGTTCTTATCTGGTGATGATACAGGCCTCTAGTGAGCTAT
AGGTGCATATTGGTTGCAAAAGCTAATCGTGGTTGATGAGGGTCTATATTTTGCTGCACC
CTTTTGGTCATGCAATTGCCGCACTATATATGTGTTTAGACAATTGCTAAATATTAACAT
AGATACTATGATGATGCATGCTGTGACATGCTAATCTGCTAGTAGTGTTGCTTTCTAACT
TTTGGACAAGTTGATAACCCTAGCTTTGTGGCCCTTTTCTTTTGTCTTGTTTAACTCGTG
GCATTACTGGCTAGAACTGATCTGTATGATGGCTGAAACTTGATGTTAAATATATTCACT
ATTTCCCTGTTGCC