Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0246200-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:3456032:3467798:-1 gene:Os09g0246200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA POLYMERASE SUBUNIT TM description:Similar to DNA-directed RNA polymerase. (Os09t0246200-01);Similar to DNA-directed RNA polymerase. (Os09t0246200-02)
Sequence	ATGCCCTCCTCCCCAACTCCGGCCACCGCACCAATCTCGTGTTCGCCATCTCCTCCTCTC CACCTCCACCTCACCGCCCGCCGCCAAACCCTAGCGCCCCCCATGTGGCGCCGCCTCCCC GCCCGCCGCCTCGCCTCCGCCCTCCTCTCCTCCTCCGCCCCGCTGCCCCACCCTCTCCAC CGCAGCCTCCTCCTCCTCCTCCCTGCCGCCTCACAGCGTCTCGCGCCGTCGCAGACGCTG CCGCGGTTCGCGTCCTCCTCCGCCGCCGTCGCCGCCGAGTCCGTCTCCTCCGAGGAGGTC GACGAGTTGCACCACGCGATCGGGGAGATCGCCCGCGGGGACCCGAGCGTCTCCGCCCCG GCTCCGGCGGCGGGGCAGGAGGGGCATAGGAGGAGGTCCGGGAGAGGGAAGCACTCGGCC GAGGCTATGGCGGTTCCGGCGGCGGGGCAGGAGGGGCATAGGAGGAGGTCCGGGAGAGGG AAGCACTCGGCCGAGGCTATGGCGGTGCACGGGGTCGGGTACCACAAGTATGCGATGCTG CGCCGGCGGCAGATCCAGATTGAGACGGAGGCGTGGGAGCAGGCCGCCGAGGAGTACCGC GAGCTGCTTGCTGACATGTGCCAGCAGAAGCTGGCGCCCAACCTGCCCTATGTCAAGTCG CTCTTTCTTGGCTGGTTCGAGCCACTGCGAGACCAGATCATTGCCGAGCAGGAGCTCGTG GGTGAGCGCGGCGCGCGGGCCTCCCATGCCCGCTATTTCAACATGCTCCCGGCTGATATG ATGGCCGTCATCACCATGCACAAGCTCATGGGTCTACTCATGACCGGTAGCGGCGATGGA AGTGTCCGAGTCATCCAGGCTGCGTGCCAGATCGGCGAGGCAATAGAACATGAGGTTCGA ATCCACAAATTTCTAGAGAAGACAAAGAAAAAAAGCAATAAAGAAATGGATAATGAAGAA GAAGGAGGTGATTCAGACATTGCCAAAGAACAAGAGCGTCTAAGAAAGAAAGTCACTGAT CTGATGAAAAAGCAAAAAATACGGCAAGTAAGAAATATAGTAAAGAAGCAAGATAACTCC AAGCCATGGGGTCAAGATGCTCATGCAAAAGTTGGTAGTCGTTTAATTGAGCTTATGATT GAGACAGCCTACATACAACCACCTGCTAGCCAATCAGCAGATGGTCCACCTGATATCCGT CCTGCTTTCACACATGAAATGAGAACTGTGGCAAGAGAGCAACAGAAGAGTAGTCGGCGA TATGGTGTGATCAAGTGTGATCCGCTGGTCCGGCAAGGGCTTGATAGAACAGCAAAGCAT ATGGTCATACCTTATATGCCTATGTTAATTCCGCCTATCAGTTGGACTGGGTATGACAAG GGTGCACATTTATTTTTACCATCCTATGTGATGCGCACCCATGGAGCTAGACAACAGAGA GATGCTGTCAGAAGAGCTCCAAGGGAACAAATGCAATCTGTGTTTGAGGCCTTAAATACT CTTGGGAGCACCAAGTGGAGGGTTAACAAAAGAGTTCTTAGTATTGTCGACAGAATATGG TCAAGTGGTGGCCGGCTTGCTGACTTGGTCGATCGCACTGATGTTGCTTTACCAGAGAAG CCTGACACAGAAGATGAAGACAAGTTGAAGAAATGGAGATGGACCTTGAGAGCAGCCAAG AAGGAAAATAGTGAAAGGCACTCCCAGAGATGTGATGTAGAACTAAAACTTGCCGTAGCT CGCAAAATGAAGGATGAAGATGGTTTCTACTATCCACACAACCTTGATTTTAGAGGCCGT GCTTATCCAATGCATCCTTACCTGAACCACTTGGGTTCAGATCTTTGCCGTGGAGTTTTG GAGTTTGCAGAAGGTCGTCCGCTTGGTAAATCAGGCTTGCGCTGGCTAAAGATACATCTA GCAAATTTATATGCTGGTGGTGTTGACAAGTTATCGTATGATGGCCGAATTGCATTCACG GAGAATCACTTGGAGGACATATTTGACTCAGCTGATAGACCTCTTGAAGGCAAACGATGG TGGCTTGGAGCTGAGGATCCATTCCAATGCCTTGCAGTGTGCATAAATCTCACTGAAGCT TTAAGAAGCCCCTCACCAGAAACGATGATCTCACATATTCCTGTGCATCAGGATGGTTCT TGTAATGGCCTGCAGCACTATGCTGCTCTTGGAAGGGATAAGTTGGGAGCCATTGCTGTG AACTTAGTTGCCGGGGAGAAGCCTGCAGATGTTTATACTGGAATAGCTACCAGGGTGGTG GAAATTATGAAGAACGATGCGCTAAAAGATCCTGCTACAGATCCTGATGCAGCACGCGCA CGTCTGCTACTTGATCAGGTTGACAGGAAATTGGTAAAGCAAACTGTGATGACATCTGTG TATGGTGTCACTTATGTTGGAGCACGTGAGCAAATAAAAAGAAGATTAAAGGAGAGAGAC ATGATTTGTGATGATTCAGAACTTTTTAGTGCATCATGCTATGCTGCTAAGGTTACTCTG ACAGCACTTGGTGAGATGTTCCAAGCTGCCCGCAGCATTATGAACTGGCTTGGTGACTGT GCCAAGGTAATTGCTTGTGAAAATGAACCTGTGAGATGGACAACCCCTCTTGGACTCCCA GTTGTTCAACCATATCGCAAGCTTGGGAGGCATCTTATTAAAACATCATTACAAGTCCTG ACTCTTCAACGTGAAACAGATAAGGTTATGGTGAAGCGGCAGAGGACTGCTTTTCCTCCA AATTTCGTGCACTCCCTTGACGGTTCTCATATGATGATGACCGCTGTTGCTTGCAAAAGG CAAGGACTAAATTTTGCAGTTGTTGGAGAGCTTTGA

Peptide Sequence

PEP ID	Os09t0246200-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:3456032:3467798:-1 gene:Os09g0246200 transcript:Os09t0246200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA POLYMERASE SUBUNIT TM description:Similar to DNA-directed RNA polymerase. (Os09t0246200-01);Similar to DNA-directed RNA polymerase. (Os09t0246200-02)
Sequence	MPSSPTPATAPISCSPSPPLHLHLTARRQTLAPPMWRRLPARRLASALLSSSAPLPHPLH RSLLLLLPAASQRLAPSQTLPRFASSSAAVAAESVSSEEVDELHHAIGEIARGDPSVSAP APAAGQEGHRRRSGRGKHSAEAMAVPAAGQEGHRRRSGRGKHSAEAMAVHGVGYHKYAML RRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELV GERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVR IHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNS KPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRR YGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQR DAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEK PDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGR AYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFT ENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGS CNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARA RLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTL TALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVL TLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAVVGEL

Transcript Sequence

Transcript ID	Os09t0246200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:3456032:3467798:-1 gene:Os09g0246200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA POLYMERASE SUBUNIT TM description:Similar to DNA-directed RNA polymerase. (Os09t0246200-01);Similar to DNA-directed RNA polymerase. (Os09t0246200-02)
Sequence	ACCGGCTCCCCCAACCGCACCCCCCTCCTTCCGTTGGCGGCGGCGGCGGCGGCGCGGCGC CATTCCCCTTCCTCCGCCACCCTCCTGTTGATGCCCTCCTCCCCAACTCCGGCCACCGCA CCAATCTCGTGTTCGCCATCTCCTCCTCTCCACCTCCACCTCACCGCCCGCCGCCAAACC CTAGCGCCCCCCATGTGGCGCCGCCTCCCCGCCCGCCGCCTCGCCTCCGCCCTCCTCTCC TCCTCCGCCCCGCTGCCCCACCCTCTCCACCGCAGCCTCCTCCTCCTCCTCCCTGCCGCC TCACAGCGTCTCGCGCCGTCGCAGACGCTGCCGCGGTTCGCGTCCTCCTCCGCCGCCGTC GCCGCCGAGTCCGTCTCCTCCGAGGAGGTCGACGAGTTGCACCACGCGATCGGGGAGATC GCCCGCGGGGACCCGAGCGTCTCCGCCCCGGCTCCGGCGGCGGGGCAGGAGGGGCATAGG AGGAGGTCCGGGAGAGGGAAGCACTCGGCCGAGGCTATGGCGGTTCCGGCGGCGGGGCAG GAGGGGCATAGGAGGAGGTCCGGGAGAGGGAAGCACTCGGCCGAGGCTATGGCGGTGCAC GGGGTCGGGTACCACAAGTATGCGATGCTGCGCCGGCGGCAGATCCAGATTGAGACGGAG GCGTGGGAGCAGGCCGCCGAGGAGTACCGCGAGCTGCTTGCTGACATGTGCCAGCAGAAG CTGGCGCCCAACCTGCCCTATGTCAAGTCGCTCTTTCTTGGCTGGTTCGAGCCACTGCGA GACCAGATCATTGCCGAGCAGGAGCTCGTGGGTGAGCGCGGCGCGCGGGCCTCCCATGCC CGCTATTTCAACATGCTCCCGGCTGATATGATGGCCGTCATCACCATGCACAAGCTCATG GGTCTACTCATGACCGGTAGCGGCGATGGAAGTGTCCGAGTCATCCAGGCTGCGTGCCAG ATCGGCGAGGCAATAGAACATGAGGTTCGAATCCACAAATTTCTAGAGAAGACAAAGAAA AAAAGCAATAAAGAAATGGATAATGAAGAAGAAGGAGGTGATTCAGACATTGCCAAAGAA CAAGAGCGTCTAAGAAAGAAAGTCACTGATCTGATGAAAAAGCAAAAAATACGGCAAGTA AGAAATATAGTAAAGAAGCAAGATAACTCCAAGCCATGGGGTCAAGATGCTCATGCAAAA GTTGGTAGTCGTTTAATTGAGCTTATGATTGAGACAGCCTACATACAACCACCTGCTAGC CAATCAGCAGATGGTCCACCTGATATCCGTCCTGCTTTCACACATGAAATGAGAACTGTG GCAAGAGAGCAACAGAAGAGTAGTCGGCGATATGGTGTGATCAAGTGTGATCCGCTGGTC CGGCAAGGGCTTGATAGAACAGCAAAGCATATGGTCATACCTTATATGCCTATGTTAATT CCGCCTATCAGTTGGACTGGGTATGACAAGGGTGCACATTTATTTTTACCATCCTATGTG ATGCGCACCCATGGAGCTAGACAACAGAGAGATGCTGTCAGAAGAGCTCCAAGGGAACAA ATGCAATCTGTGTTTGAGGCCTTAAATACTCTTGGGAGCACCAAGTGGAGGGTTAACAAA AGAGTTCTTAGTATTGTCGACAGAATATGGTCAAGTGGTGGCCGGCTTGCTGACTTGGTC GATCGCACTGATGTTGCTTTACCAGAGAAGCCTGACACAGAAGATGAAGACAAGTTGAAG AAATGGAGATGGACCTTGAGAGCAGCCAAGAAGGAAAATAGTGAAAGGCACTCCCAGAGA TGTGATGTAGAACTAAAACTTGCCGTAGCTCGCAAAATGAAGGATGAAGATGGTTTCTAC TATCCACACAACCTTGATTTTAGAGGCCGTGCTTATCCAATGCATCCTTACCTGAACCAC TTGGGTTCAGATCTTTGCCGTGGAGTTTTGGAGTTTGCAGAAGGTCGTCCGCTTGGTAAA TCAGGCTTGCGCTGGCTAAAGATACATCTAGCAAATTTATATGCTGGTGGTGTTGACAAG TTATCGTATGATGGCCGAATTGCATTCACGGAGAATCACTTGGAGGACATATTTGACTCA GCTGATAGACCTCTTGAAGGCAAACGATGGTGGCTTGGAGCTGAGGATCCATTCCAATGC CTTGCAGTGTGCATAAATCTCACTGAAGCTTTAAGAAGCCCCTCACCAGAAACGATGATC TCACATATTCCTGTGCATCAGGATGGTTCTTGTAATGGCCTGCAGCACTATGCTGCTCTT GGAAGGGATAAGTTGGGAGCCATTGCTGTGAACTTAGTTGCCGGGGAGAAGCCTGCAGAT GTTTATACTGGAATAGCTACCAGGGTGGTGGAAATTATGAAGAACGATGCGCTAAAAGAT CCTGCTACAGATCCTGATGCAGCACGCGCACGTCTGCTACTTGATCAGGTTGACAGGAAA TTGGTAAAGCAAACTGTGATGACATCTGTGTATGGTGTCACTTATGTTGGAGCACGTGAG CAAATAAAAAGAAGATTAAAGGAGAGAGACATGATTTGTGATGATTCAGAACTTTTTAGT GCATCATGCTATGCTGCTAAGGTTACTCTGACAGCACTTGGTGAGATGTTCCAAGCTGCC CGCAGCATTATGAACTGGCTTGGTGACTGTGCCAAGGTAATTGCTTGTGAAAATGAACCT GTGAGATGGACAACCCCTCTTGGACTCCCAGTTGTTCAACCATATCGCAAGCTTGGGAGG CATCTTATTAAAACATCATTACAAGTCCTGACTCTTCAACGTGAAACAGATAAGGTTATG GTGAAGCGGCAGAGGACTGCTTTTCCTCCAAATTTCGTGCACTCCCTTGACGGTTCTCAT ATGATGATGACCGCTGTTGCTTGCAAAAGGCAAGGACTAAATTTTGCAGTTGTTGGAGAG CTTTGAGAAATCTTTCCCTGAATTAAAATTTCCTCCATTGCCAGAGAGGGGAGATTTTGA TCTCACGGATGTCCTGGGATCCCCATATTTCTTCAACTAAGTCAAGCTGTGGTGGAAAGC ATGTTATTCTACCTTGCTTTGCTGCCCACCTGTGGCCTGGAGTTCTATTGAAGTATATGA GCGGCCCAGCAGTCTCAGATGACGAAACTAATTCTTTTGCTAGCTGACTGAAAAATTCGT GGATGTCTTGCGTGAAAGCTGAAGGTATACCTAGAAAAAAGCATTTTAAACAGAGCTGGC CAAGGAGATAGTTGAGGGGATGTCTTCAAGCAACAGTCAAATAAGTGGGAACCGATCAAG AAAAGCTCTGGGAGTAGGTTTTGTTGCGTTTAGGCTTACTGTAGTTTATATATTAGTGAC TTTCTTGCTATTCTTTTTTTTTTAATATCAGGCTCACGTTTAGCACGGATACATCTTGGA AGATGTTCTGGTCCATGTAAATGTAATTATGTAATTTTTTGCCCTCTTAAGTTTTTTTCT TTTTTTCTTTTGTGCAATTTATAGAGGGGGTGAATCTGATGACTAAATACCGGCAAAACA CTAATTTATACTAGTTATCATTGCGGTTGTAAGGTAACATCTTAAATAATAAAGTGATAT AGGTTGGCTTCCTCATCATT