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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0242800-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:3205935:3206883:1 gene:Os09g0242800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0242800-01)
Sequence

ATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGG
AACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCG
GTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGC
GCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCG
GACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGG
CTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCC
GCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACT
AGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTC
TTGTCTGGCTGA

Peptide Sequence

PEP ID

Os09t0242800-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:3205935:3206883:1 gene:Os09g0242800 transcript:Os09t0242800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0242800-01)
Sequence

MDDDGDWITARYLLSSILGRNPLVVDYVDEESFPVEDPPPVAGGARGGRQAVVSQPPVVR
ATAGVAGTVCSVCTEEIAVADAVVRLPCAHWYHAGCISPWLGIRSTCPMCRAELPASDDA
AEEGGGAGREKPPRAGRAGTSAGGGVRRDASYELLAGGGVLSG

Transcript Sequence

Transcript ID

Os09t0242800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:3205935:3206883:1 gene:Os09g0242800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0242800-01)
Sequence

CTCTGTTTCACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTT
TCTCTCTCTAGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGA
CTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGA
TTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCG
TGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGC
CGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCT
CCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCAC
ATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGG
TGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGT
CAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGC
TGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTA
CAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAA
CGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGG
TTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTAT
GCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAAC
TATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTC