Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0123500-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:1814051:1822556:-1 gene:Os09g0123500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os09t0123500-01)
Sequence

ATGGGGAAGCAGGAGCAGGAGAAGATGCTCCTCCAGGCCGCCTACGATGACAACCTCCGC
CTCCTCAGGAAGATGGCGCGAGGGCTGGACACCGGGCAGGGCGAGGCTGCCGTCGTGGCG
GCGGTGGCGGGCAGGGCCGACGGGAACCGCGCTCTCCACCTGGCGGCCGCCCGAGGAAGC
ATGGATGTCCTCAGGTACCTCGTGGAGGACCTCCACCTCAGCGTCAACCAGTTCAATGCC
AAAGGTGAAACACCACTGTGCCTTTCTTCAATTCATGGGAGAGCTGCTGCTACAAGATAT
CTTCTCGATCACGGTTCTGATCCTACGATTGATAAATCAGTGTTACCTTTTCATGCTGCT
GCAACGAAAGGACACTGCGAAATAGTAGAGTTGTTTCTTTCAAGAGGAGTTGATGTGGAT
TTAGATTCTATCACTGGGACCCCATTGCTGACAGCTGCGATGAATGGCCAATATAGCACG
ATGAAGATTTTATTGGAGCATCACGCTGATCCTAACAGGGTTGTCAATCATAATGGTACC
CCATTGATTATGTCCATAGTTTCTGGATCATTGGAATGCGTGAAGCTATTAATCAAAGTT
GGTGCTGATGTGAATTTTAGAGATCCCAATGGTGTTACTTGTGTGATGGTCGCAGCAAAT
CATGGCTCTCCTGTCATCATGAAGTGCTTACTAGATGCTGGTGCTAATTCAAATATTCCA
GATGAATTTAATAGGACTCCAATTGAAGTTGCCGCTAATCGAGGCAGAAGGGACATTGTT
AAAATGTTGTTTCCTTTAACTTCACCAATTTCAACACTGCCTGATTGGAGTATCGATGGA
GTTATTTCTCATGTGCAAACTTTTGGTTTGAAGCCAAGGGATAATGATCTGTCTAAAAGG
AAAAGTGCTGAACTGAAATTACAAGCTAGAGAGGCTTTCGAGAGAGAGGAATATATGCTT
GCAGGACAACACTACACTAATGCAATAGAACTTACCACTAATGCTCATGATAAGGCAACC
CTGCTAGCAAACAGGAGCCTGTGCTGGTTGCGTTTGTCAACCGGCAATGGGGCTCTTGCT
GATGCTAACATGTGCAGAATGTTGCGGCCCAGTTGGCCCAAAGCATGCTATCGACAAGGG
GCAGCTTTCATGTTTCTAAAGGACTATGGAAAAGCTTGTGAAGCTTTTGCAGATGGCTTG
AAGTTGGACCCTGCAAATGAAGATATAGCGAAAGCTTTAAGGGATGCCCAGGAGGCCATG
AAGGACCAAATGGAGCACAGAGGTTGA

Peptide Sequence

PEP ID

Os09t0123500-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:1814051:1822556:-1 gene:Os09g0123500 transcript:Os09t0123500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os09t0123500-01)
Sequence

MGKQEQEKMLLQAAYDDNLRLLRKMARGLDTGQGEAAVVAAVAGRADGNRALHLAAARGS
MDVLRYLVEDLHLSVNQFNAKGETPLCLSSIHGRAAATRYLLDHGSDPTIDKSVLPFHAA
ATKGHCEIVELFLSRGVDVDLDSITGTPLLTAAMNGQYSTMKILLEHHADPNRVVNHNGT
PLIMSIVSGSLECVKLLIKVGADVNFRDPNGVTCVMVAANHGSPVIMKCLLDAGANSNIP
DEFNRTPIEVAANRGRRDIVKMLFPLTSPISTLPDWSIDGVISHVQTFGLKPRDNDLSKR
KSAELKLQAREAFEREEYMLAGQHYTNAIELTTNAHDKATLLANRSLCWLRLSTGNGALA
DANMCRMLRPSWPKACYRQGAAFMFLKDYGKACEAFADGLKLDPANEDIAKALRDAQEAM
KDQMEHRG

Transcript Sequence

Transcript ID

Os09t0123500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:1814051:1822556:-1 gene:Os09g0123500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os09t0123500-01)
Sequence

GCGTGACTCGCGCGCATCATCCAAATCCCACTACCGCTCCCTTCCAAAAACCAAACTCCG
CAGTCTCTACCAAACCCACGCCGGCGCCGCATCGTCTTCGTCTCGTCTCCTCCAGTCAAG
TGCTAGCTAGGGCCTAGGCTGCCGCTCCCGCTCTCTCGCCTTCTTCACCCCCGAGCCTGA
TCGATGGGGAAGCAGGAGCAGGAGAAGATGCTCCTCCAGGCCGCCTACGATGACAACCTC
CGCCTCCTCAGGAAGATGGCGCGAGGGCTGGACACCGGGCAGGGCGAGGCTGCCGTCGTG
GCGGCGGTGGCGGGCAGGGCCGACGGGAACCGCGCTCTCCACCTGGCGGCCGCCCGAGGA
AGCATGGATGTCCTCAGGTACCTCGTGGAGGACCTCCACCTCAGCGTCAACCAGTTCAAT
GCCAAAGGTGAAACACCACTGTGCCTTTCTTCAATTCATGGGAGAGCTGCTGCTACAAGA
TATCTTCTCGATCACGGTTCTGATCCTACGATTGATAAATCAGTGTTACCTTTTCATGCT
GCTGCAACGAAAGGACACTGCGAAATAGTAGAGTTGTTTCTTTCAAGAGGAGTTGATGTG
GATTTAGATTCTATCACTGGGACCCCATTGCTGACAGCTGCGATGAATGGCCAATATAGC
ACGATGAAGATTTTATTGGAGCATCACGCTGATCCTAACAGGGTTGTCAATCATAATGGT
ACCCCATTGATTATGTCCATAGTTTCTGGATCATTGGAATGCGTGAAGCTATTAATCAAA
GTTGGTGCTGATGTGAATTTTAGAGATCCCAATGGTGTTACTTGTGTGATGGTCGCAGCA
AATCATGGCTCTCCTGTCATCATGAAGTGCTTACTAGATGCTGGTGCTAATTCAAATATT
CCAGATGAATTTAATAGGACTCCAATTGAAGTTGCCGCTAATCGAGGCAGAAGGGACATT
GTTAAAATGTTGTTTCCTTTAACTTCACCAATTTCAACACTGCCTGATTGGAGTATCGAT
GGAGTTATTTCTCATGTGCAAACTTTTGGTTTGAAGCCAAGGGATAATGATCTGTCTAAA
AGGAAAAGTGCTGAACTGAAATTACAAGCTAGAGAGGCTTTCGAGAGAGAGGAATATATG
CTTGCAGGACAACACTACACTAATGCAATAGAACTTACCACTAATGCTCATGATAAGGCA
ACCCTGCTAGCAAACAGGAGCCTGTGCTGGTTGCGTTTGTCAACCGGCAATGGGGCTCTT
GCTGATGCTAACATGTGCAGAATGTTGCGGCCCAGTTGGCCCAAAGCATGCTATCGACAA
GGGGCAGCTTTCATGTTTCTAAAGGACTATGGAAAAGCTTGTGAAGCTTTTGCAGATGGC
TTGAAGTTGGACCCTGCAAATGAAGATATAGCGAAAGCTTTAAGGGATGCCCAGGAGGCC
ATGAAGGACCAAATGGAGCACAGAGGTTGATTCAGCCTTACCTTGCGCCTCTATTTTGTT
GCTAGCTACTCCCTCCGTTCTATAAAAAGTATAAATCTAAGACATGCGACATATTCTAAT
ACTATGAATTTAATATAAATTAGGATATGTCACATCTGTTACGGTTTGTATTTTATGGTA
AAGAGGGAGTAAGTCCCAAAGACATTTTGGCTGCCAACGGACAAGCTTTTGCGTTTTGTT
AACCTGAGACCTGAGAGTTTAGTGTTAAATGTGAACTATGTGGGAACTATTTCATGGTTT
GTGG