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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0116800-00
CDS Infomation

cds chromosome:IRGSP-1.0:9:1325181:1325826:-1 gene:Os09g0116800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 78 description:Similar to DNA binding protein. (Os09t0116800-00)
Sequence

ATGGTGATGGTGACGGCGGCAGCGGCGAGGAGGCGGCCGAGCCTGGGGCGGCAGAAGATC
GAGATCCGGCGCATCGAGAGCGAGGAGGCACGGCAGGTGTGCTTCTCCAAGCGCCGTGCG
GGCTTCTTCAAGAAGGCCAGCGAGCTGTCCATCCTGTGCAGCGCCGACGTGGCGGCCGTC
GTCTTCTCCCCCGCCGGCAAGGCCTACTCCTTCGGCCACCCGTCGGTGGAGTTCCTCCTG
GACCGCTTCCTCTCGTCGTCGTTGCCCGCGACGGCCGGGAAGGAGGAGGGGTCGTCGGTC
TCGGTGGTGGCGGAGCTCAACAGGCAGTACGGCGAGCTGCGCGCGATGGTGGACGCCCAC
AAGGCGCGCCGGGAGAGGGCGGAGAAGACGATGGAGAAGCAGCGGCAGCGGCAGCCCGCG
GCGTGGATGGATCCGGAGGCGGAGGTGGGTCGCATGGCGCCGGAGGAGCTGATGGCCTTA
GGGACGAAGCTGGTGGCCGTGCAAGGTGGCGTGGCGGCGCGCGCGGACCAGATGCTGCGT
GACGCGCTGCTTCTTGGCCGGAGGCCGAACACCACCACCACCACCACCACCAGGGCGCCG
CCCGGCTTCTTCCACCTGCACCCGCACTTCTGA

Peptide Sequence

PEP ID

Os09t0116800-00
PEP Infomation

pep chromosome:IRGSP-1.0:9:1325181:1325826:-1 gene:Os09g0116800 transcript:Os09t0116800-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 78 description:Similar to DNA binding protein. (Os09t0116800-00)
Sequence

MVMVTAAAARRRPSLGRQKIEIRRIESEEARQVCFSKRRAGFFKKASELSILCSADVAAV
VFSPAGKAYSFGHPSVEFLLDRFLSSSLPATAGKEEGSSVSVVAELNRQYGELRAMVDAH
KARRERAEKTMEKQRQRQPAAWMDPEAEVGRMAPEELMALGTKLVAVQGGVAARADQMLR
DALLLGRRPNTTTTTTTRAPPGFFHLHPHF

Transcript Sequence

Transcript ID

Os09t0116800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:1325181:1325826:-1 gene:Os09g0116800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 78 description:Similar to DNA binding protein. (Os09t0116800-00)
Sequence

GCTCGAGGTAGGTATGGTGATGGTGACGGCGGCAGCGGCGAGGAGGCGGCCGAGCCTGGG
GCGGCAGAAGATCGAGATCCGGCGCATCGAGAGCGAGGAGGCACGGCAGGTGTGCTTCTC
CAAGCGCCGTGCGGGCTTCTTCAAGAAGGCCAGCGAGCTGTCCATCCTGTGCAGCGCCGA
CGTGGCGGCCGTCGTCTTCTCCCCCGCCGGCAAGGCCTACTCCTTCGGCCACCCGTCGGT
GGAGTTCCTCCTGGACCGCTTCCTCTCGTCGTCGTTGCCCGCGACGGCCGGGAAGGAGGA
GGGGTCGTCGGTCTCGGTGGTGGCGGAGCTCAACAGGCAGTACGGCGAGCTGCGCGCGAT
GGTGGACGCCCACAAGGCGCGCCGGGAGAGGGCGGAGAAGACGATGGAGAAGCAGCGGCA
GCGGCAGCCCGCGGCGTGGATGGATCCGGAGGCGGAGGTGGGTCGCATGGCGCCGGAGGA
GCTGATGGCCTTAGGGACGAAGCTGGTGGCCGTGCAAGGTGGCGTGGCGGCGCGCGCGGA
CCAGATGCTGCGTGACGCGCTGCTTCTTGGCCGGAGGCCGAACACCACCACCACCACCAC
CACCAGGGCGCCGCCCGGCTTCTTCCACCTGCACCCGCACTTCTGA