Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0103400-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:429888:432329:-1 gene:Os09g0103400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MICRORNA2055 description:Conserved hypothetical protein. (Os09t0103400-01)
Sequence

ATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATTCCCACGCT
CACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGGAGCTCGAG
TCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCGTCGCCCCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCTCCGATTCG
CCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGCTGCAGGCG
AACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCA
CCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCT
GATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTCG
TCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGACGCTGCCAGCGCTTCAG
GCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCC
GGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTC
AATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGCCCAAGAAG
AAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCAAGGAGAAG
ATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGAAGAGCACCCCGAC
TTGTTTAAGGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCAGTGCCCTGGATGCTAAG
ATCAAGCAGCTGACTTTGGCTCAGGTCAGGGTGTCTTTGAAGGGGCGTGACCTGGAGAAG
GAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGA

Peptide Sequence

PEP ID

Os09t0103400-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:429888:432329:-1 gene:Os09g0103400 transcript:Os09t0103400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MICRORNA2055 description:Conserved hypothetical protein. (Os09t0103400-01)
Sequence

MAPIVRPSKSGSNSDSDSHAHHPPPEPPQESSDGEDLELESSEELDSHGAPTKKAPFVAP
PPPPPPPPPPQQNGKEVSDSPSLPTNSAIVLSPLPPPLQANKNHQDQDSESDSDSDDDEP
PLPTNNAIVLAPPNNQESESDSDSDDDQESALKANKIVSSSGDDDQESDSSDDETLPALQ
ANKNASPSDDDEDDDQESDSGDDDVLLDPALQANKNVLAFNGKRKVPPQEVGQSLRQPKK
KKMEAPAQGNTDIDTQFKEKIASYFFLGKVVSLLDEEHPDLFKEAFLKLADSKASALDAK
IKQLTLAQVRVSLKGRDLEKELIKLLSGFLK

Transcript Sequence

Transcript ID

Os09t0103400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:429888:432329:-1 gene:Os09g0103400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MICRORNA2055 description:Conserved hypothetical protein. (Os09t0103400-01)
Sequence

GAGCACAAGAAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGA
GCAGAGGAAACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCG
ATTCCGATTCCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCG
AGGACTTGGAGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAG
CCCCCTTCGTCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGA
AGGAGGTCTCCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTAC
CACCACCGCTGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATT
CTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACA
ACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGA
ACAAGATTGTGTCCTCGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGA
CGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACG
ACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACA
AGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTC
TTCGGCAGCCCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACA
CGCAATTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGG
ATGAAGAGCACCCCGACTTGTTTAAGGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCA
GTGCCCTGGATGCTAAGATCAAGCAGCTGACTTTGGCTCAGGTCAGGGTGTCTTTGAAGG
GGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCATTAT
AGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAAT
GCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTCATT
TTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCAC
CAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACC
TGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCATTC